Journal of Bioinformatics and Sequence Analysis
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Article Number - 8A1E5372273


Vol.1(1), pp. 011-016 , May 2009

ISSN: 2141-2464



Full Length Research Paper

A computational technique for prediction and visualization of promoter regions in long human genomic sequences


Q. M. Alfred1*, K. Bishayee1, P. Royand T. Ghosh3




 

1University Institute of Technology, University of Burdwan, West Bengal, India 713104

2Department of Biotechnology, University of Burdwan, West Bengal, India, 713104

3Burdwan Medical College and Hospital, West Bengal, India.


Email: quazi_alfred@yahoo.co.in






 Accepted: 29 April 2009  Published: 29 May 2009

Copyright © 2009 Author(s) retain the copyright of this article.
This article is published under the terms of the Creative Commons Attribution License 4.0


 

This communication proposes a simple algorithm with high specificity and sensitivity for determining promoter regions in human genomic sequences. This method relies upon non-redundant and experimentally verified promoter data sets form Eukaryotic Promoter Database (EPD) as training parameters. This technique predicts and computationally satisfies the promoter regions in the NCBI annotated database around gene sequences.  

 

Keywords: Promoter, CpG islands, transcription start site (TSS), discrete fourier transform/ fast fourier transform (DFT/FFT).

 


APA (2009). A computational technique for prediction and visualization of promoter regions in long human genomic sequences. Journal of Bioinformatics and Sequence Analysis, 1(1), 011-016.
Chicago Q. M. Alfred, K. Bishayee, P. Roy and T. Ghosh. "A computational technique for prediction and visualization of promoter regions in long human genomic sequences." Journal of Bioinformatics and Sequence Analysis 1, no. 1 (2009): 011-016.
MLA Q. M. Alfred, et al. "A computational technique for prediction and visualization of promoter regions in long human genomic sequences." Journal of Bioinformatics and Sequence Analysis 1.1 (2009): 011-016.
   
DOI
URL http://academicjournals.org/journal/JBSA/article-abstract/8A1E5372273

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