African Journal of
Agricultural Research

  • Abbreviation: Afr. J. Agric. Res.
  • Language: English
  • ISSN: 1991-637X
  • DOI: 10.5897/AJAR
  • Start Year: 2006
  • Published Articles: 6914

Full Length Research Paper

Analysis of a bacterial community structure and the diversity of phzF gene in samples of the Amazonian Dark Earths cultivated with cowpea [Vigna unguiculata (L.) Wald]

Rosineide C. de Souza
  • Rosineide C. de Souza
  • National Institute for Amazonian Research, Av. André Araújo, nº 2936 – Manaus/AM, Brazil.
  • Google Scholar
Fabiana de S. Cannavan
  • Fabiana de S. Cannavan
  • Cell and Molecular Laboratory, Center for Nuclear Energy in Agriculture (CENA), University of São Paulo, Av. Centenário – 303, Piracicaba/SP, Brazil.
  • Google Scholar
Luis I. B. Kanzaki
  • Luis I. B. Kanzaki
  • Laboratory of Bioprospection, University of Brasilia, Campus Darcy Ribeiro, Brasília/DF, Brazil.
  • Google Scholar
Lucas W. Mendes
  • Lucas W. Mendes
  • Cell and Molecular Laboratory, Center for Nuclear Energy in Agriculture (CENA), University of São Paulo, Av. Centenário – 303, Piracicaba/SP, Brazil.
  • Google Scholar
Beatriz M. Ferrari
  • Beatriz M. Ferrari
  • Cell and Molecular Laboratory, Center for Nuclear Energy in Agriculture (CENA), University of São Paulo, Av. Centenário – 303, Piracicaba/SP, Brazil.
  • Google Scholar
Rogerio E. Hanada
  • Rogerio E. Hanada
  • National Institute for Amazonian Research, Av. André Araújo, nº 2936 – Manaus/AM, Brazil.
  • Google Scholar
Siu M. Tsai
  • Siu M. Tsai
  • Cell and Molecular Laboratory, Center for Nuclear Energy in Agriculture (CENA), University of São Paulo, Av. Centenário – 303, Piracicaba/SP, Brazil.
  • Google Scholar


  •  Received: 28 January 2018
  •  Accepted: 13 March 2018
  •  Published: 20 September 2018

References

Berlec A (2012). Novel techniques and findings in the study of plant microbiota: search for plant probiotics. Plant Science 193-194:96-102.
Crossref

 

Bettiol W, Ghini R, Morandi MAB (2005). Alguns métodos alternativos para o controle de doenças de plantas disponíveis no Brasil. In: Venzon M, Junior TJ, Palline A, Coord. Controle alternativo de pragas e doenças. EPAMIG/CTZM:UFV.

 

Brossi MJL, Mendes LW, Germano MG, Lima AB, Tsai SM (2014). Assessment of bacterial bph gene in amazonian dark earth and their adjacent soils. Plos One 9:1-12.
Crossref

 

Cenciani K, Lambais MR, Cerri CC, Azevedo LCB, Feigl BJ (2009). Bacteria diversity and microbial biomass in forest, pasture and fallow soils in the southwestern amazon basin. The Revista Brasileira de Ciência do Solo 33:907-916.
Crossref

 

Clarke KR (1993). Non-parametric multivariate analysis of changes in community structure. Austral ecology 18:117-143.
Crossref

 

Compant S, Duffy B, Nowak J, Clément C, Barka EA (2005). Use of plant growth-promoting bacteria for biocontrol of plant diseases: principles, mechanisms of action, and future prospects. Applied and Environmental Microbiology 71:4951-4959.
Crossref

 

Dini-Andreote F, van Elsas JD (2013). Back to the basics: The need for ecophysiological insights to enhance our understanding of microbial behavior in the rhizosphere. Plant Soil 373:1-15.
Crossref

 

Edwards U, Rogall T, Blocker H, Emde M, Böttger EC (1989). Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Research 17:7843-7853.
Crossref

 

Fierer N (2017). Embracing the unknown: disentangling the complexities of the soil microbiome. Nature Reviews Microbiology 15(10):579-590.
Crossref

 

Fitzpatrick DA (2009). Lines of evidence for horizontal gene transfer of a phenazine producing operon into multiple bacterial species. Journal of Molecular Evolution 68:171-185.
Crossref

 

Germano MG, Cannavan FS, Mendes LW, Lima AB, Teixeira WG, Pellizari VH, Tsai SM (2012). Functional diversity of bacterial genes associated with aromatic hydrocarbon degradation in anthropogenic dark earth of amazonia. Pesquisa Agropecuária Brasileira 47:654-664.
Crossref

 

Glasser B (2007). Prehistorically Modified Soils of Central Amazonia: A Model for sustainable agriculture in the twenty-first century. Philosophical Transactions of the Royal Society B- Biological sciences 362(1478):187-196.
Crossref

 

Gouda S, Kerry RG, Das G, Paramithiotis S, Shin HS, Patra JK (2018). Revitalization of plant growth promoting rhizobacteria for sustainable development in agriculture. Microbiological Research 206:131-140.
Crossref

 

Guttenberger N, Blankenfeldt W, Breinbauer R (2017). Recent developments in the isolation, biological function, biosynthesis, and synthesis of phenazine natural products. Bioorganic and Medicinal Chemistry 25(22):6149-6166.
Crossref

 

Heuer H, Krsek M, Baker P, Smalla K, Wellington EM (1997). Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel electrophoresis separation in denaturing gradients. Applied and Environmental Microbiology 63:3233-3241.

 

Hinsinger P, Bengough AG, Vetterlein D, Young IM (2009). Rhizosphere: biophysics, biogeochemistry, and ecological relevance. Plant Soil 321:117-152.
Crossref

 

Jacoby R, Peukert M, Succurro A, Koprivova A, Kopriva S (2017). The Role of Soil Microorganisms in Plant Mineral Nutrition-Current Knowledge and Future Directions. Frontiers in Plant Science 8:1617.
Crossref

 

Jesus EC, Marsh TL, Tiedje JM, Moreira FMS (2009). Changes in land use alter structure of bacterial communities in western amazon soils. The ISME Journal 3:1004-1011.
Crossref

 

Larkin AA, Martiny AC (2017). Microdiversity shapes the traits, niche space, and biogeography of microbial taxa. Environmental Microbiology Reports 9(2):55-70.
Crossref

 

Lehmann J, Ker DC, German L, Mccann J, Martins GC, Moreira A (2003). Soil Fertility And Production Potential. In: Lehmann J, Kern DC, Glaser B, Woods W, Editors. Amazonian dark earths: origin, properties, management. Dordrecht: Kluwer Academic Publishers.
Crossref

 

Lima AB, Cannavan FS, Navarrete AA, Teixeira WG, Kuramae EE, Tsai SM (2014). Amazonian dark earth and plant species from the amazon region contribute to shape rhizosphere bacterial communities. Microbial Ecology 68:1-14.

 

Lima HN, Schaefer CER, Mello JWV, Gilkes RJ, Ker JC (2002). Pedogenesis and pre-colombian land use of "Terra Preta Anthrosols" ("Indian black earth") of western amazonia. Geoderma 110:1-17.
Crossref

 

Lovic B, Heck C, Gallian JJ, Anderson AJ (1993). Inhibition of the sugarbeet pathogens Phoma betae and Rhizoctonia solani by bacteria associated with sugarbeet seeds and roots. Journal of Sugar Beet Research 30:169-184.
Crossref

 

Madari BE, Reeves JB, Machado PLOA, Guimarães CM, Torres E, McCarty GW (2006). Mid and near-infrared spectroscopic assessment of soil compositional parameters and structural indices in two ferrasols. Geoderma 136:1-15.
Crossref

 

Mavrodi DV, Peever TL, Mavrodi OV, Parejko JA, Raaijmakers JM, Lemanceau P, Mazurier S, Heide L, Blankenfeldt W, Weller DM, Thomashow LS (2010). Diversity and evolution of phenazine biosynthesis. Applied and Environmental Microbiology 76(3):886-879.
Crossref

 

Melo IS, Azevedo JL (2008). Microbiologia Ambiental. In: Melo IS, Editor. Importância da rizosfera da biodegradação de xenobióticos. São Paulo, Jaguariúna: Empresa Brasileira de Pesquisa Agropecuária.

 

Moreira FMS, Siqueira JO (2006). Microbiologia e bioquímica do solo. (2nd ed.) Minas Gerais, Brasil:UFLA.

 

Navarrete AA, Cannavan FS, Taketani RG, Tsai MS (2010). A molecular survey of the diversity of microbial communities in different amazonian agricultural model systems. Diversity 2:787-809.
Crossref

 

Nakamura FM, Germano MG, Tsai SM (2014). Capacity of aromatic compound degradation by bacteria from amazon dark earth. Diversity 6:339-353.
Crossref

 

Pace N (1997). A molecular view of microbial diversity and the biosphere. Science 276:734-740.
Crossref

 

Palys T, Nakamura LK, Cohan FM (1997). Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data. International Journal of Systematic Bacteriology 47(4):1145-56.
Crossref

 

Raaijmakers JM, Weller DM, Thomashow LS (2001). Frequency of antibiotic-producing Pseudomonas spp. in natural environments. Applied and Environmental Microbiology 63:881-887.

 

Raiesi T, Hosseinpur A, Raiesi H (2015). Influence of bean rhizosphere on the biological properties and phosphorus fractionation in the calcareous soils amended with municipal sewage sludge. Journal of Arid Land 7(5):644-652.
Crossref

 

Raij BV, Andrade JC, Cantarella H, Quaggio JA (2001). Editors. Análise química para avaliação da fertilidade de solos tropicais. IAC.

 

Rashid MH, Chung YR (2017). Induction of Systemic Resistance against Insect Herbivores in Plants by Beneficial Soil Microbes. Frontiers in Plant Science 8:1816.
Crossref

 

Silva FAS (1996). The ASSISTAT software statistical assistence In: Sixth International Conference on Computers in Agriculture, Cancun, Mexico: Annals of the American Society of Agricultural Engineers 1:294-296.

 

Suárez Moya A (2017). Microbiome and next generation sequencing. Revista Espanola De Quimioterapia 30(5):305-311.

 

Trotha R, Reichl U, Thies FL, Sperling D, König W, König B (2002). Adaption of a fragment analysis technique to an automated high-throughput multicapillary electrophoresis device for the precise qualitative and quantitative characterization of microbial communities. Electrophoresis 23(7-8):1070-9.
Crossref

 

Weller DM, Raaijmakers JM, Gardener BB, Thomashow LS (2002). Microbial populations responsible for specific soil suppressiveness to plant pathogens. Annual Review of Phytopathology 40:309-348.
Crossref

 

Woese CR, Kandler O, Wheelis L (1990). Towards a natural system of organisms: proposal for the domains archaea, bacteria and eucarya. Proceedings of the National Academy of Sciences of the United States 87:4576-4579.
Crossref