African Journal of
Biotechnology

  • Abbreviation: Afr. J. Biotechnol.
  • Language: English
  • ISSN: 1684-5315
  • DOI: 10.5897/AJB
  • Start Year: 2002
  • Published Articles: 12271

Full Length Research Paper

Genetic diversity and population structure among sorghum (Sorghum bicolor, L.) germplasm collections from Western Ethiopia

Dilooshi K. Weerasooriya
  • Dilooshi K. Weerasooriya
  • Department of Agronomy, Kansas State University, Manhattan KS 66506, USA.
  • Google Scholar
Frank R. Maulana
  • Frank R. Maulana
  • Department of Agronomy, Kansas State University, Manhattan KS 66506, USA.
  • Google Scholar
Ananda Y. Bandara
  • Ananda Y. Bandara
  • Department of Plant Pathology, Kansas State University, Manhattan KS 66506, USA.
  • Google Scholar
Alemu Tirfessa
  • Alemu Tirfessa
  • Melkassa Research Center, Ethiopian Institute of Agricultural Research, P. O. Box 436, Nazareth Ethiopia.
  • Google Scholar
Amsalu Ayana
  • Amsalu Ayana
  • Oromia Agricultural Research Institute, Addis Ababa, Ethiopia.
  • Google Scholar
Girma Mengistu
  • Girma Mengistu
  • Melkassa Research Center, Ethiopian Institute of Agricultural Research, P. O. Box 436, Nazareth Ethiopia.
  • Google Scholar
Kinde Nouh
  • Kinde Nouh
  • Oromia Agricultural Research Institute, Addis Ababa, Ethiopia.
  • Google Scholar
Tesfaye T. Tesso
  • Tesfaye T. Tesso
  • Department of Agronomy, Kansas State University, Manhattan KS 66506, USA.
  • Google Scholar


  •  Received: 29 March 2015
  •  Accepted: 13 May 2016
  •  Published: 08 June 2016

References

Abebe M (2007). Nature and Management of Acid Soils in Ethiopia. EIAR, Addis Ababa, Ethiopia.

 

Addinsoft (2009). XLSTAT statistical analysis software, 2012. IOP Publishing Physics Web www.xlstat.com (Accessed 26 December 2013).

 
 

Adugna A (2014). Analysis of in situ diversity and population structure in Ethiopian cultivated Sorghum bicolor (L.) landraces using phenotypic traits and SSR markers. Springerplus 3:212.
Crossref

 
 

Ali ML, Rajewski JF, Baenziger PS, Gill KS, Eskridge KM, Dweikat I (2008). Assessment of genetic diversity and relationship among a collection of U.S. sweet sorghum germplasm. Mol. Breed. 21:497-509.
Crossref

 
 

Bacilieri R, Lacombe T, Le Cunff L, Di Vecchi-Staraz M, Laucou V, Genna B, Péros JP, This P, Boursiquot JM (2013). Genetic structure in cultivated grape vines is linked to geography and human selection. BMC Plant Biol. 13(1):1.
Crossref

 
 

Bhattramakki D, Dong J, Chhabra AK, Hart GE (2000). An integrated SSR and RFLP linkage map of Sorghum bicolor (L.) Moench. Genome 43:988-1002.
Crossref

 
 

Billot C, Ramu P, Bouchet S, Chantereau J, Deu M, Gardes L, Noyer JL, Rami JF, Rivallan R, Li Y, Lu P, Wang T, Folkertsma RT, Arnaud E, Upadhyaya HD, Glaszmann JC, Hash CT (2013). Massive Sorghum Collection Genotyped with SSR Markers to Enhance Use of Global Genetic Resources. Plos One 8:1-16.
Crossref

 
 

Burow G, Burke JJ, Xin Z, Franks C (2010). Genetic dissection of early- season cold tolerance in sorghum (Sorghum bicolor (L.) Moench).

 
 

Crasta OR, Xu WW, Rosenow DT, Mullet J, Nguyen HT (1999). Mapping of post-flowering droughtresistance traits in grain sorghum: association between QTLs influencing premature senescence and maturity. Mol. Genet Genomics 262(3):579-588.
Crossref

 
 

Cui YX, Xu GW, Magill CW, Schertz KF, Hart GE (1995). RFLP-based assay of Sorghum bicolor (L.) Moench genetic diversity. Theor. Appl. Genet. 90:787-796.
Crossref

 
 

de Oliveira AC, Richter T, Bennetzen JL (1996). Regional and racial specifications in sorghum germplasm assessed with DNA markers. Genome 39:579-587.
Crossref

 
 

de Wet (1977). Domestication of African Cereals. Afr. Econ. Hist. 3:15-32.

 
 

de Wet JMJ, Harlan JR (1971). The origins and domestication of Sorghum bicolor. Econ. Bot. 25:128-135.
Crossref

 
 

Doggett H (1970). Sorghum (Tropical Agriculture Series). Longmans, London.

 
 

Ellis JR, Burke JM (2007). EST-SSRs as a resource for population genetic analyses. Heredity 99:125-132.
Crossref

 
 

Frederiksen RA (2000). Diseases and disease management in sorghum. In: Smith CW, Frrederiksen RA (eds.) Sorghum: Origin, History, Technology and Production. New York: John Wiley and Sons. Pp.497-533.

 
 

Garud TB, Ismail S, Shinde BM (2000). Effect of two mold-causing fungi on germination of sorghum seed. International Sorghum and Millets Newsletter, pp. 41-54.

 
 

Gebeyehu G (1993). Characterization and Evaluation of Sorghum [Sorghum bicolor Moench (L.)] Germplasms Collected from Gambella. Alemaya University of Agriculture, Ethiopia.

 
 

Ghebru B, Schmidt J, Bennetzen L (2002). Genetic diversity of Eritrean sorghum landraces assessed with simple sequence repeat (SSR) markers. Theor. Appl. Genet. 105(2-3):229-236.
Crossref

 
 

Gupta PK, Varshney RK (2000). The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat. Euphytica 113(3):163-185.
Crossref

 
 

Harlan JR, Stemler ABL (1976). The races of sorghum in Africa. In. Harlan JR, de Wet JMJ and Stemer ABL (eds.) Origins of African Plant Domestication, Mouton, The Hague, The Netherlands, pp. 465-478.
Crossref

 
 

Hodges RJ, Hall AJ, Jayaraj K, Jaiswal P, Potdar N, Yoganand B, Navi SS (1999). Quality changes in farm-stored sorghum grain grown in the wet or dry season in South India – A technical and social study. NRI Report 2412. Chatham Avenue, Kent ME4 4TB, UK: Natural Resources Institute. 33p.

 
 

Ibrahim OE, Nyquist WE, Axtell JD (1985). Quantitative inheritance and correlations of agronomic and grain quality traits of sorghum. Crop Sci. 25:649-654.
Crossref

 
 

Jennings P, Cock J (1977). Centres of origin of crops and their productivity. Econ. Bot. 31:51-54.
Crossref

 
 

Knoll J, Ejeta G (2008). Marker-assisted selection for early-season cold tolerance in sorghum: QTL validation across populations and environments. Theor. Appl. Genet.116:541-553.
Crossref

 
 

Kong L, Dong J, Hart GE (2000). Characteristics, linkage-map positions, and allelic differentiation of Sorghum bicolor (L.) Moench DNA simple-sequence repeats (SSRs). Theor. Appl. Genet.101:438-448.
Crossref

 
 

Lekgari A, Dweikat I (2014). Assessment of Genetic Variability of 142 Sweet Sorghum Germplasm of Diverse Origin with Molecular and Morphological Markers. Open J. Ecol. 4:371-393.
Crossref

 
 

Letunic I, Bork P (2011). Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res. 39 (Web Server issue):W475-8.

 
 

Little CR., Perumal R, Tesso T, Prom LK, Odvody GN, Magill CW (2012). Sorghum Pathology and Biotechnology - A Fungal Disease Perspective: Part I. Grain Mold, Head Smut, and Ergot. Eur. J. Plant Sci. Biotechnol. 6(Special Issue 1):10-30.

 
 

Liu K, Muse SV (2005). PowerMarker: An integrated analysis environment for genetic marker analysis. Bioinformatics 21:2128-2129.
Crossref

 
 

Maiti RK, Raju PS, Bidinger FR (1985). Studies on germinability and some aspects of preharvest physiology of sorghum grain. Seed Sci. Technol. 13:27-35.

 
 

Menz MA, Klein RR, Mullet JE, Obert JA, Unruh NC,Klein PE (2002). A high-density genetic map of Sorghum bicolor (L) Moench based on 2926 AFLP, RFLP and SSR markers. Plant Mol. Biol. 48:483-499.
Crossref

 
 

Mutegi E, Sagnard F, Semagn K, Deu M, Muraya M, Kanyenji B, de Villiers S, Kiambi D, Herselman L, Labuschagne M (2011). Genetic structure and relationships within and between cultivated and wild sorghum (Sorghum bicolor (L.) Moench) in Kenya as revealed by microsatellite markers. Theor. Appl. Genet. 122(5):989-1004.
Crossref

 
 

Naeem M, Khan MMA, Moinuddin, Idrees M, Aftab T (2011). Triacontanol-mediated regulation of growth and other physiological attributes, active constituents and yield of Mentha arvensis L. Plant Growth Regul. 65(1):195-206.
Crossref

 
 

Nageri A (1984). The effect of lime and phosphorus application on the dry matter and grain yield of bread wheat (Triticum aestivum) grown on red soils of Ghimbi and Nedjo Woreda of Wollega Region, Western Ethiopia. M.Sc. Thesis. School of Graduate Studies, Alamaya College of Agriculture, Addis Ababa University, Addis Ababa, Ethiopia. 87 p.

 
 

Navi SS, Bandyopadhyay R, Reddy RK, Thakur RP, Yang XB (2005). Effects of wetness duration and grain development stages on sorghum grain mold infection. Plant Dis. 89:872-878.
Crossref

 
 

Nei M (1972). Genetic distance between populations. Am. Nat. 106:283-292.
Crossref

 
 

Ng'uni D, Geleta M, Bryngelsson T (2011). Genetic diversity in sorghum (Sorghum bicolor (L.) Moench) accessions of Zambia as revealed by simple sequence repeats (SSR). Hereditas 148(2):52-62.
Crossref

 
 

Prasada Rao KE, Mengesha MH (1981). A pointed collection of Zera-Zera sorghum in the Gambella area of Ethiopia, Genetic Resources Progress Report no. 33. ICRISAT, Patancheru, India.

 
 

Pritchard JK, Stephens M, Donnelly P (2000a). Inference of population structure using multilocus genotype data. Genetics 155:945-959.

 
 

Pritchard JK, Stephens M, Rosenberg NA, Donnelly P (2000b). Association mapping in structured populations. Am. J. Hum. Genet. 67:170-181.
Crossref

 
 

Rai KN, Murty DS, Andrews DJ, Bramel-Cox PJ (1999). Genetic enhancement of pearl millet and sorghum for the semi-arid tropics of Asia and Africa. Genome 42:617-628.
Crossref

 
 

Reddy BVS, Bandyopadhyay R, Ramaiah B, Ortiz R (2000). Breeding grain mold resistant sorghum cultivars. In. Technical and institutional options for sorghum grain mold management: proceedings of an international consultation, 18-19 May 2000, ICRISAT, Patancheru, India (Chandrashekar A, Bandyopadhyay R, Hall AJ, eds.). Patancheru, India, ICRISAT. Pp. 195-224.

 
 

Rӧder MS, Plaschke J, Kӧnig SU, Bӧrner A, Sorrells ME, Tanksley SD, Ganal MW (1995). Abundance, variability and chromosomal location of microsatellites in wheat. Mol. Genet. 246:327-333.

 
 

Saghai-Maroof MA, Soliman KM, Jorgensen RA, Allard RW(1984). Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. PNAS (USA). 81:8014-8018.
Crossref

 
 

Satish K, Gutema Z, Grenier C, Rich PJ, Ejeta G (2012).Molecular tagging and validation of microsatellite markers linked to the low germination stimulant gene (lgs) for Striga resistance in sorghum [Sorghum bicolor (L.) Moench]. Theor. Appl. Genet. 124(6):989-1003.
Crossref

 
 

Snowden JD (1936). The cultivated races of sorghum. Adlard and Sons, London, UK.

 
 

Somani RB, Indira I (1999). Effect of grain molds on grain weight in sorghum. J. Mycol. Plant Pathol. 29:22-24.

 
 

Strehlow B, de Mol F, Struck C (2014). History of oilseed rape cropping and geographic origin influence the genetic structure of Plasmodiophora brassicae populations. Phytopathology 104(5):532-538.
Crossref

 
 

Tao Y, Manners JM, Ludlow M, Henzel RJ (1993). DNA polymorphisms in grain sorghum (Sorghum bicolor (L.) Moench). Theor. Appl. Genet. 86:679-688.
Crossref

 
 

Tao YZ, Jordan DR, Henzell RG, McIntyre CL (1998). Construction of a genetic map in a sorghum RIL population using probes from different sources and its comparison with other sorghum maps. Aust. J. Agric. Res. 49:729-736.
Crossref

 
 

Tesso T, Claflin LE, Tuinstra MR (2005). Analysis of stalk rot resistance and genetic diversity among drought tolerant sorghum gentoypes. Crop Sci. 45:645-652.
Crossref

 
 

Thakur RP, Reddy BVS, Indira S, Rao VP, Navi SS, Yang X-B, Ramesh S (2006). Sorghum Grain Mold. Plant Pathology and Microbiology Publications and Papers. Paper 1.

 
 

Van Inghelandt D, Melchinger AE, Lebreton C, Stich B (2010). Population structure and genetic diversity in a commercial maize breeding program assessed with SSR and SNP markers. Theor. Appl. Genet. 120:1289-1299.
Crossref

 
 

Vanzetti LS, Yerkovich N, Chialvo E, Lombardo L, Vaschetto L and Helguer M (2013). Genetic structure of Argentinean hexaploid wheat germplasm. Genet. Mol. Biol. 36(3):391-399.
Crossref

 
 

Varshney RK, Song C, Saxena RK, Azam S, Yu S, Sharpe AG, Cannon S, Baek J, Rosen BD, Tar'an B, Millan T (2013). Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nat. Biotechnol. 31:240-246.
Crossref

 
 

Wang ML, Dean R, Erpelding J, Pederson G (2006). Molecular genetic evaluation of sorghum germplasm differing in response to fungal diseases: Rust (Puccinia purpurea) and anthracnose (Collectotrichum graminicola). Euphytica 148:319-330.
Crossref

 
 

Wang ML, Zhu C, Barkley NA, Chen Z, Erpelding JE, Murray SC, Tuinstra MR, Tesso T, Pederson GA, Yu J (2009). Genetic diversity and population structure analysis of accessions in the U.S. historic sweet sorghum collection. Theor. Appl. Genet. 120:13-23.
Crossref

 
 

Xu W, Subudhi PK, Crasta OR, Rosenow DT, Mullet JE, Nguyen HT (2000). Molecular mapping of QTLs conferring stay-green in grain sorghum (Sorghum bicolor L. Moench). Genome 43(3):461-469.
Crossref

 
 

Yeh FC, Yang RC, Boyle TBJ, Ye ZH, Mao JX (1997). POPGENE, the user-friendly shareware for population genetic analysis. Canada: Molecular Biology and Biotechnology Centre, University of Alberta.

 
 

Zhang Z, Lin Z, Xin Z (2009). Research progress in BYDV resistance genes derived from wheat and its wild relatives. J. Genet. Genomics 36(9):567-573.
Crossref