Full Length Research Paper
References
|
Abad JA, Moyer JW (1992). Detection and distribution of sweet potato feathery mottle virus in sweet potato by in vitro transcribed RNA probes (riboprobes), membrane immunobinding assay and direct blotting. Phytopathology 82:300-305. |
|
|
Addinsoft (2017). Data analysis and statistical solutions for Microsoft Excel. Addinsoft, Paris, France. |
|
|
Adikini S, Mukasa SB, Mwanga ROM, Gibson RW (2016). Effects of sweet potato feathery mottle virus and sweet potato chlorotic stunt virus on yield of sweet potato in Uganda. Journal of Phytopathology 164:242-254. |
|
|
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25:3389-3402. |
|
|
Baulcombe D (2004). RNA silencing in plants. Nature 431:356-363. |
|
|
Burge CB (1998). Modeling dependencies in pre-Mrna splicing signals. In Salzberg S, Searls D, Kasif S eds. Computational methods in Molecular Biology. Elsevier Sceience, Amsterdam pp.127-163. |
|
|
Chellappan P, Vanitharani R, Fauquet CM (2004). Short interfering RNA accumulation correlates with host recovery in DNA virus-infected hosts, and gene silencing targets specific viral sequences. Journal of Virology 78:7465-7477. |
|
|
Edgar RC (2004). MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acid Research 32:1792-1797. |
|
|
Feng JY, Li M, Zhao S, Zhang C, Yang ST, Qiao S, Tan WF, Qu HJ, Wang DY, Pu ZG (2018). Analysis of evolution and genetic diversity of sweet potato and its related different polyploidy wild species I. trifida using RADseq. BioMed Central Plant Biology 18:181. |
|
|
Fuentes S (2010). Sweet potato virus indexing procedure - OP23. International Potato Center (CIP). |
|
|
Jukes TH, Cantor CR (1969). Evolution of protein molecules. In Munro HN, editor, Mammalian Protein Metabolism, Academic Press, New York pp. 21-132. |
|
|
Gasura E, Mukasa SB (2010). Prevalence and implications of sweet potato recovery from sweet potato virus disease in Uganda. African Crop Science Journal 18:195-205. |
|
|
Gibb KS, Podovan AC (1993). Detection of sweet potato feathery mottle virus in sweetpotato grown in northern Australia using an efficient and simple assay. International Journal of Pest Management 39:223-228. |
|
|
Gibson RW, Kreuze JF (2014). Degeneration in sweet potato due to viruses, virus-cleaned planting material and reversion: a review. Plant Pathology 64:1-15. |
|
|
Gibson RW, Mpembe J, Alicia T, Carey EE, Mwanga ROM, Seal SE, Vetten HJ (1998). Symptoms, etiology and serological analysis of sweet potato virus diseases in Uganda. Plant Pathology 47:95-102. |
|
|
Gibson RW, Wasswa P, Tufan HA (2014). The ability of cultivars of sweet potato in East Africa to 'revert' from sweet potato feathery mottle virus infection. Virus Research 186:130-134. |
|
|
Goodstein DM, Shu S, Howson R, Neupane R, Hayes RD, Fazo J, Mitros T, Dirks W, Hellsten U, Putnam N, Rokhsar DS (2012). Phytozome: A comparative platform for green plant genomics. Nucleic Acid Research 40:1178-1186. |
|
|
Green SK, Kuo YJ, Lee DR (1988). Uneven distribution of two potyviruses (sweet potato feathery mottle virus and sweet potato latent virus) in sweet potato plants and its implication on indexing of meristem-derived plants. Tropical Pest Management 34:298-302. |
|
|
Griffing B (1956). Concept of general and specific combining ability in relation to diallel crossing systems. Australian Journal of Biological Sciences 9:463-493. |
|
|
Guo Y, Wu Y, Anderson JA, Moss JQ, Zhu L (2015). Disomic inheritance and segregation distortion of SSR markers in two populations of Cynodon dactylon (L.) Pers. var. dactylon. PLoS ONE 10:e0136332. |
|
|
Hunter LJR, Brockington SF, Murphy AM, Pate AE, Gruden K, MacFarlane SA, Palukaitis P, Carr JP (2016). RNA-dependent RNA polymerase 1 in potato (Solanum tuberosum) and its relationship to other plant RNA dependent RNA polymerases. Scientific Reports 6:23082. |
|
|
Knox MR, Ellis THN (2002). Excess heterozygosity contributes to genetic map expansion in pea recombinant inbred populations. Genetics 162:861-873. |
|
|
Ky CL, Barre P, Lorieux M, Trouslot P, Akaffou S, Louarn J, Charrier A, Hamon S, Noirot M (2000). Interspecific genetic linkage map, segregation distortion and genetic conversion in coffee (Coffea sp.). Theoretical and Applied Genetics 101:669-676. |
|
|
Leibman D, Kravchik M, Wolf D, Haviv S, Weissberg M, Ophir R, Paris HS, Palukaitis P, Ding SW, Gaba V, Gal-on A (2017). Differential expression of cucumber RNA-dependent RNA polymerase 1 genes during antiviral defence and resistance. Molecular Plant Pathology 19:300-312. |
|
|
Liu X, You J, Guo L, Liu X, He Y, Yuan J, Liu G (2011). Genetic analysis of segregation distortion of SSR markers in F2 population of barley. Journal of Agricultural Science 3:172-177. |
|
|
Lomsadze A, Gemaye K, Tang S, Borodovsky M (2018). Modeling leaderless transcription and atypical genes results in more accurate gene prediction in prokaryotes. Genome Research 28:1079-1089. |
|
|
Low JW, Mwanga ROM, Andrade M, Carey E, Ball AM (2017). Tackling vitamin A deficiency with biofortified sweet potato in sub-Saharan Africa. Global Food Security 14:23-30. |
|
|
Martins WS, Lucas DCS, de Souza Neves KF, Bertioli DJ (2009). WebSat - A web software for microsatellite marker development. Bioinformation 3:282-283. |
|
|
Maruthi MN, Colvin J, Seal S, Gibson G, Cooper J (2002). Co-adaptation between cassava mosaic geminiviruses and their local vector populations. Virus Research 86:71-85. |
|
|
Mason AS (2015). SSR Genotyping. In: Batley J, editor. Plant Genotyping. Springer; New York, NY: pp. 77-89. |
|
|
Morgulis AR, Coulouris G, Raytselis Y, Madden TL, Agarwala R, Schafffer AA (2008). Database indexing for production MegaBLAST searches. Bioinformatics 24:1757-1764. |
|
|
Mukasa SB, Rubaihayo PR, Valkonen JPT (2003). Incidence of viruses and virus like diseases of sweet potato in Uganda. Plant Disease 87:329-335. |
|
|
Mwanga ROM, Kriegner A, Cervantes-Flores JC, Zhang DP, Moyer JW, Yencho GC (2002). Resistance to sweet potato chlorotic stunt virus and sweet potato feathery mottle virus is mediated by two separate recessive genes in sweet potato. Journal of the American Society for Horticultural Science 127:798-806. |
|
|
Mwanga ROM, Kyalo G, Ssemakula GN, Niringiye C, Yada B, Otema MA (2016). NASPOT 12 O" and "NASPOT 13 O" sweetpotato. HortScience 51:291-295. |
|
|
Mwanga ROM, Odongo B, Niringiye C, Alajo A (2007). Release of two orange-fleshed sweet potato cultivars, 'SPK004' ('Kakamega') and 'Ejumula', in Uganda. HortScience 42:1728-1730. |
|
|
Mwanga ROM, Ssemakula G (2011). Orange-fleshed sweetpotatoes for food, health and wealth in Uganda. International Journal of Agricultural Sustainability 9:42-49. |
|
|
Mueller LA, Solow TH, Taylor N, Skwareck B, Buels R, Binns J, Lin C, Wright MH, Ahrens R, Wang Y, Herbst EV, Keyder ER, Menda N, Zamir D, Tanksley SD (2005). The SOL Genomics Network: a comparative resource for Solanaceae biology and beyond. Plant Physiology 138:1310-1317. |
|
|
Okonechnikoy K, Golosova O, Fursov M (2012). The UGENE team. Unipro UGENE: a unified bioinformatics toolkit. Bioinformatics 28:1166-1167. |
|
|
Parado KH (2010). SSR for sweetpotato. View. Accessed 2/11/2018. |
|
|
Peragine A, Yoshikawa M, Wu G, Albrecht HL, Poethig RS (2004). SGS3 and SGS2/ SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis. Genes and Development 18:2368-2379. |
|
|
Puelma T, Araus V, Canales J, Vidal E, Cabello J, Soto A, Gutierrez R (2017). GENIUS: Web server to predict local gene networks and key genes for biological functions. Bioinformatics 33:760-761. |
|
|
Rachkara P, Phillips DP, Kalule SW, Gibson RW (2017). Innovative and beneficial informal sweet potato seed private enterprise in northern Uganda. Food Security 9:595-610. |
|
|
Radhika V, Aswath C, Lakshman Reddy DC, Bhardwaj SA (2011). In silico microsatellite development in arum lily (Zantedeschia aethiopica). Journal of Horticultural Science 6:37-40. |
|
|
Rukarwa RJ, Mukasa SB, Sefasi A, Ssemakula G, Mwanga ROM, Ghislain M (2013). Segregation analysis of cry7Aa1 gene in F1 progenies of transgenic and non-transgenic sweet potato crosses. Journal of Plant Breeding and Crop Science 5:209-213. |
|
|
Schafleitner R, Tincopa LR, Palomino O, Rossel G, Robles RF, Alagon R, Rivera C, Quispe C, Rojas L, Pacheco JA, Solis J, Cerna D, Kim JY, Hou J, Simon R (2010). A sweet potato gene index established by denovo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers. BMC Genome 11:604. |
|
|
Stanke M, Steinkamp R, Waack S, Morgenstern B (2004). AUGUSTUS: A web server for gene finding in eukaryotes. Nucleic Acids Research 32 (Web Server issue) W309-12. |
|
|
Stift M, Berenos C, Kuperus P, van Tienderen PH (2008). Segregation models for disomic, tetrasomic and intermediate inheritance in tetraploids: A general procedure applied to Rorippa (Yellow Cress) microsatellite data. Genetics 179:2113-2123. |
|
|
Tang S, Okashah RA, Cordonnier-Pratt M, Prat LH, Johnson VE, Taylor CA, Arnold ML, Knapp SJ (2009). EST and EST-SSR marker resources for Iris. BMC Plant Biology 9:72. |
|
|
Vieira MLC, Santini L, Diniz AL, Munhoz CF (2016). Microsatellite markers: what they mean and why they are so useful. Genetics and Molecular Biology 39:312-28. |
|
|
Wanderley-Nogueira AC, Soares-Cavalcanti NM, Morais DAL, Belarmino LC, Barbosa-Silva A, Benko-Iseppon AM (2007). Abundance and diversity of resistance genes in the sugarcane transcriptome revealed by in silico analysis. Genetics and Molecular Research 6:866-889. |
|
|
Wang Z, Li J, Luo Z, Huang L, Chen X, Fang B, Li Y, Chen J, Zhang X (2011). Characterization and development of EST-derived SSR markers in cultivated sweet potato (Ipomoea batatas). BMC Plant Biology 11:139. |
|
|
Wasswa P, Otto B, Maruthi MN, Mukasa SB, Monger W, Gibson RW (2011). First identification of a sweet potato begomovirus (sweepovirus) in Uganda: characterization, detection and distribution. Plant Pathology 60:1030-1039. |
|
|
Wheeler DL, Church DM, Federhen S, Lash LE, Madden TL, Pontius JU, Schuler GD, Schriml LM, Sequeira E, Tatusova TA, Wagner L (2003). Database resources of the National Center for Biotechnology. Nucleic Acid Research 31:28-33. |
|
|
Wen M, Wang H, Xia Z, Zou M, Lu C, Wang W (2010). Development of EST-SSR and genomic-SSR markers to assess genetic diversity in Jatropha curcas L. BMC Research Notes 3:42. |
|
|
Wu S, Lau KH, Cao Q, Hamilton JP, Sun H, Zhou C, Eserman L, Gemenet D, Olukolu B, Wang H, Crisovan E, Godden GT, Jiao C, Wang X, Kitavi M, Manrique-Carpintero N, Vaillancourt B, Wiegert-Rininger K, Yang X, Bao K, Zheng Y, Schaff J, Kreuze J, Gruneberg W, Khan A, Ghislain M, Ma D, Jiang J, Mwanga ROM, Leebens-Mack J, Coin LJM, Yencho GC, Buell CR, Fei Z (2018). Genome sequences of two diploid wild relatives of cultivated sweet potato reveal targets for genetic improvement. Nature Communications 9:4580. |
|
|
Yada B, Alajo A, Ssemakula GN, Mwanga ROM, Brown-Guedira G, Yencho GC (2017). Selection of Simple Sequence Repeat Markers Associated with Inheritance of Sweet potato Virus Disease Resistance in Sweetpotato. Crop Science 57:1421-1430. |
|
|
Yamagishi M, Takeuchi Y, Tanaka I, Kono I, Murai K, Yano M (2010). Segregation distortion in F2 and doubled haploid populations of temperate japonica rice. Journal of Genetics 89:237-241. |
|
|
Yang J, Moeinzadeh MH, Kuhl H, Helmuth J, Xiao P, Haas S, Liu G, Zheng J, Sun Z, Fan W, Deng G (2017). Haplotype-resolved sweet potato genome traces back its hexaploidization history. Nature Plants 3:696-703. |
|
|
Yeh RF, Lim LP, Burge CB (2001). Computational inference of homologous gene structures in the human genome. Genome Research 11:803-816. |
|
|
Yermishin AP, Svitoch OV, Voronkova EV, Gukasian ON, Luksha VI (2016). Determination of the composition and the allelic state of disease and pest resistance genes in potato parental lines using DNA markers. Russian Journal of Genetics 52:498-506. |
|
|
Zou JJ, Singh RJ, Lee J, Xu SJ, Hymowitz T (2006). SSR markers exhibit trisomic segregation distortion in soybean. Crop Breeding and Genetics 46:1456-1461. |
|
Copyright © 2025 Author(s) retain the copyright of this article.
This article is published under the terms of the Creative Commons Attribution License 4.0
