African Journal of
Biotechnology

  • Abbreviation: Afr. J. Biotechnol.
  • Language: English
  • ISSN: 1684-5315
  • DOI: 10.5897/AJB
  • Start Year: 2002
  • Published Articles: 12294

Full Length Research Paper

Identification of a novel submergence response gene regulated by the Sub1A gene

Hewei Du
  • Hewei Du
  • College of Life Science, Yangtze University, Jingzhou, Hubei 434025, P. R. China.
  • Google Scholar
Min Huang
  • Min Huang
  • College of Life Science, Yangtze University, Jingzhou, Hubei 434025, P. R. China.
  • Google Scholar
Jianxiong Zhu
  • Jianxiong Zhu
  • College of Life Science, Yangtze University, Jingzhou, Hubei 434025, P. R. China.
  • Google Scholar
Hang Su
  • Hang Su
  • College of Life Science, Yangtze University, Jingzhou, Hubei 434025, P. R. China.
  • Google Scholar
Xiu Zeng
  • Xiu Zeng
  • College of Life Science, Yangtze University, Jingzhou, Hubei 434025, P. R. China.
  • Google Scholar


  •  Received: 13 October 2016
  •  Accepted: 15 November 2016
  •  Published: 07 December 2016

References

Fukao T, Bailey-Serres J (2008). Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellins responses in rice. PNAS 105(43):16814-16819.
Crossref

 

Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng QD, Chen ZH, Mauceli E, Hacohen N, Gnirke A, Rhind N, Palma FD, Birren BW, Nusbaum C, Lindblad-Toh K, Friedman N, Regev A (2011). Full-length transcriptome assembly from RNA-seq data without a reference genome. Nat. Biotechnol. 29(7):644-652.
Crossref

 
 

Jung KH, Seo YS, Walia H, Cao PJ, Fukao T, Canlas PE, Amonpant F, Bailey-Serres J, Ronald PC (2010). The submergence tolerance regulator Sub1A mediates stress-responsive expression of AP2/ERF transcription factors. Plant Physiol. 152:1674-1692.
Crossref

 
 

Li GT, Chern M, Jain R, Martin JA, Schackwitz WS, Jiang L, Vega-Sánchez ME, Lipzen AM, Barry KW, Schmutz J, Ronald PC (2016). Genome-wide sequencing of 41 rice mutated lines reveals diverse mutations induced by fast-neutron irradiation. Mol. Plant. 9(7):1078-1081.
Crossref

 
 

Perata P, Voesenek LACJ (2007). Submergence tolerance in rice requires Sub1A, an ethylene-response-factor-like gene. Trends Plant Sci. 12(2):43-46.
Crossref

 
 

Reiner A, Yekutieli D, Benjamini Y (2003). Identifying differentially expressed genes using false discovery rate controlling procedures. Bioinformatics 19(3):368-375.
Crossref

 
 

Roy M, Jain RK, Rohila JS, Wu R (2000). Production of agronomically superior transgenic rice plants using Agrobacterium transformation methods: present status and future perspectives. Curr. Sci. 79(10):954-960.

 
 

Seo YS, Chern MS, Bartley LE, Han M, Jung KH, Lee I, Walia H, Richter T, Xu X, Cao PJ, Bai W, Ramanan R, Amonpant F, Arul L, Canlas PE, Ruan R, Park CJ, Chen XW, Hwang S, Jeon JS, Ronald PC (2011) Towards establishment of a rice stress response interactome. PLoS Genet. 7(4):e1002020.
Crossref

 
 

Septiningsih EM, Sanchez DL, Singh N, Sendon PMD, Pamplona AM, Heuer S, Machill DJ (2012). Identifying novel QTLs for submergence tolerance in rice cultivars IR72 and Madabaru. Theor. Appl. Genet. 124:867-874.
Crossref

 
 

Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, Baren MJV, Salzberg SL, Wold BJ, Pachter L (2010). Transcript assembly and quantification by RNA-seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28(5):511-515.
Crossref

 
 

Xiong HY, Li JJ, Liu PL, Duan JZ, Zhao Y, Guo X, Li Y, Zhang HL, Ali J, Li ZC (2014). Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice. PLoS One 9(3):e92913.
Crossref

 
 

Xiong HY, Yang J, Li YS (2012). Identification of submergence-responsive genes in two indica rice genotypes carrying SUB1A-1 but exhibiting differential tolerance. J. Plant Biol. 55:233-241.
Crossref

 
 

Xu KN, Xu X, Fukao T, Canlas P, Maghirang-Rodriguez R, Heuer S, Ismail AM, Bailer-Serres J, Ronald PC, Machill DJ (2006). Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice. Nature 442:705-708.
Crossref