African Journal of
Environmental Science and Technology

  • Abbreviation: Afr. J. Environ. Sci. Technol.
  • Language: English
  • ISSN: 1996-0786
  • DOI: 10.5897/AJEST
  • Start Year: 2007
  • Published Articles: 941

Full Length Research Paper

Preliminary study on climate seasonal and spatial variations on the abundance and diversity of fungi species in natural plantation ecosystems of Ile-Ife, South West, Nigeria

Omomowo, I. O.*
  • Omomowo, I. O.*
  • Department of Pure and Applied Biology, Ladoke Akintola University of Technology, P. M. B 4000, Ogbomoso, Nigeria.
  • Google Scholar
Salami, A. O.
  • Salami, A. O.
  • Department of Crop Production and Protection, Obafemi Awolowo University, Ile-Ife, Nigeria.
  • Google Scholar
Olabiyi, T. I.
  • Olabiyi, T. I.
  • Department of Crop and Environmental Protection, Ladoke Akintola University of Technology, P. M. B 4000, Ogbomoso, Nigeria.
  • Google Scholar


  •  Received: 09 June 2016
  •  Accepted: 24 November 2016
  •  Published: 31 January 2017

 ABSTRACT

The biodiversity assessment of fungi and the knowledge of the forces that controls the distribution of fungi and their community are becoming more important in the light of climate change and variability. Fungi provide the global foundation for plant as mutualists, decomposers and pathogens. This study deals with the primary screening, characterization and seasonal variations of mycoflora, isolated from medicinal, oil palm and plantain plantations of the Obafemi Awolowo University, Ile-Ife, Nigeria, from February to June. Fungi colonies and different fungal species were screened and identified across different months and weather variability. Data on the weather variations were collected. Soil samples (0 to 30 cm depth) were collected at different locations within the rhizosphere in each plantation, and the physico-chemical properties and fungi microbial load were determined using standard techniques. The result of soil physico-chemical properties showed that the soil type was humus and acidic in nature. A total of 8 fungi genera and 33 species were recorded in the studied plantations. Temperature of the studied areas ranged between 22.5 to 31.06°C, while the relative humidity of the studied sites ranged from 54.6 to 100%. The rainfall data obtained in this study ranged between 0.381 to 0.584 m. The highest microbial load was (8 × 105 CFU/g) and was observed under medicinal plantation in the month of June. The results obtained showed that weather variability’s have direct effect on different fungal species sporulation and CFU formation.

Key words: Climate, fungi, soil, microbial load, natural plantation.


 INTRODUCTION

Soil is one of the most abundant, valuable and complex natural products of the Earth and can  be  observed  from different angles. Soil is the habitat for fungi, bacteria, plants and animals, resulting in an enormous  biodiversity of belowground and aboveground soil microorganisms. Soil organisms are major drivers of biogeochemical nutrient cycles (carbon, nitrogen, phosphorous: C, N, P), and hence are indispensable for life on Earth. Soil harbours an enormous diversity of life. A handful of soil can contain literally billions of bacterial cells, and tens of thousands of bacterial (Torsvik et al., 2002) and hundreds of fungal species (Read, 1992).

Changes in climatic conditions such as fluctuations in the abundance and seasonality of rainfall have important consequence at the ecosystem level (Fierer and Schimel, 2002; Waldrop, 2006; Weltzin et al., 2009). An increase in soil temperature, potentially could have a strong impact on the agro-ecosystem (Fuhrer, 2003), leading to determinant effects on the soil microbial community structure and thus the necessity to consider the impact of climate change on microbial community composition (Allison and Martiny, 2008).Temporal variations in soil physico-chemical properties pH, moisture, total organic matter and total nitrogen availability are reported to influence the population status and their species composition of microorganisms in the soil (Bhattacharyya and Jha, 2011; Das and Dkhar, 2011). In addition to these factors, climate variables such as temperature regime and rainfall are also known to have a profound effect on distribution and population structure of soil microorganisms.

Atmospheric and climatic changes also have great impact on both abiotic and biotic drivers in ecosystems and the response of ecosystems to these changes especially in the rain forest region (Castro et al., 2010; Kopp et al., 2010). Tropical rainforest ecosystem plays important role in the purification of air and water, regulation of water flow, detoxification and decomposition of wastes, generation and renewal of soil and soil fertility, carbon sequestration, biodiversity conservation, climate stabilization, moderation of temperature extremes, windbreaks, support for diverse culture and aesthetic beauty and landscape enrichment (Daily, 1997).

Soil microbes are an essential component in the process of decomposition and biogeochemical cycling. Microbes perform a number of critical functions and regulate important ecosystem processes, but it is unclear how the abundance and composition of microbial communities correlate with climatic perturbations interact to effect ecosystem processes. Most microorganisms in soil are known to occur both in the bulk soil region where there is no growth of plants as well as in the rhizosphere region with profound effects of plants root systems. The population and diversity of these organisms have been reported to be higher in the rhizosphere regions where active interaction occurs between microorganisms and the root systems than in bulk soil regions (Brimecombe, 2001; Yang et al., 2013). Distribution and intensity of rhizosphere microbial communities have been reported to differ between plant species, within species and between different developmental stages  of  a  given  plant  due  to physiological effects (Garbeva et al., 2008; Broeckling et al., 2008; Batten et al., 2006).  The exact number of fungi on earth has always been a point of discussion and several studies have been intensified and focused on enumerating the world’s fungal diversity (Crous, 2006). From the late 1940s, there have been a growing interest in soil mycology and soil borne fungal diseases of plants and this too has motivated the studies on soil fungi and their ecology (Subramanian, 1986).

Fungi are one of the most important and functional groups of soil microbes and have been reported to perform essential role for functioning of the ecosystem (Doran and Parkin, 1994, 1996; Hawksworth et al., 1996).  Due to their capability to decompose complex macromolecules they are vital for making the nutrients like C, N, P and S accessible in the soil.  Although, many researchers have worked on the occurrence and distribution of soil fungi of forest soils, some of these have dealt with the influence of plant community type (Mohanty and Panda, 1991, 1994a, 1998; Manoharchary et al., 2005, 2008; Panda, 2011; Van Maanen et al., 2000; Gourbiere et al., 2001; Cabello and Arambarri,  2002; Schmit and Mueller, 2007; Shivakumar et al.,  2012; Zhang et al., 2012), while others have tried to examine the effect of soil depth (Behera et al., 1991; Behera and Mukherji, 1985; Mohanty and Panda, 1994b) and a few have attempted to examine the diversity of these fungi (Nilima et al., 2007). Information is scanty on seasonal variations and fungi population within the rhizosphere of Medicinal, Plantain and Oil palm plantations in Nigeria.

This study was designed as a preliminary investigation on the influence of climate seasonal variations on fungi distribution and diversity in a natural vegetation; tropical rain forest agro-ecological soil land grown with Medicinal, Plantain and Oil palm plantation of the Teaching and Research farm of Obafemi Awolowo University, Ile-Ife, South West, Nigeria.


 MATERIALS AND METHODS

Study site

The present study was conducted by collecting soil samples from the rhizosphere of three selected plants and collected from four different locations in the Teaching and Research farm (Lat7°30.4581 N, Long 4°31.5791 E) of Obafemi awolowo University, Ile -Ife. Lat7°33.151 N, Long 4°32.9661 E of the campus for  plantain plantation, Lat7°33.3181 N, Long 4°32.9261 E for  medicinal plantation, Lat7°32.3181 N, Long 4°32.8561 E for Oil palm plantation and Lat7°33.3351 N, Long 4°32.9121 E for the control plantation sites within Obafemi Awolowo University, Ile-Ife, South West, Nigeria.

Sample analysis

Soil samples were collected from fully established Medicinal, Plantain and oil palm plantations of Obafemi Awolowo University, Ile-Ife, Nigeria.  Soil samples were collected at depth of 0  to  15 cm and 16 to 30 cm of the plant rhizosphere using soil auger. Also, control soil samples were collected from bare agricultural field. 1 kg of rhizosphere soil was collected within the rhizosphere of soil in triplicates from each study site, and the samples were brought to the laboratory in sealed plastic bags and stored at 4 to 10°C in the refrigerator.

Physico-chemical analysis of soil

Soil temperature was determined using soil thermometer and soil pH was determined in a soil water suspensions.  Their bulk density was determined following the method of Blake and Hartge (1986) using soil corer, while soil organic carbon was determined using rapid titration method as described by Walkley and Black’s in Tropical soil biology and fertility (Anderson and Ingram, 1993).

Microbial population analysis

Soil microbial populations were assessed through culture dependent method, following the serial dilution technique. 10 g fresh soil was suspended in 90 ml sterile water and thoroughly shaken for 15 min in a mechanical shaker. Fungi were isolated from the representative sample by following the serial dilution plate technique, 10-3 and 10-4 was obtained and used for isolation of fungus. 1 ml of suspension from respective dilution was transferred aseptically   into   petri   dishes   containing    the    medium separately. The organism was isolated from soil samples by using different mycological media that include Saboraud Dextrose Agar (SDA), Malt Extract Agar (MEA), Cornmeal Agar, Rose Bengal Agar, and Potato Dextrose Agar (PDA) medium. The fungal colonies were picked up and purified by streaking and incubated at 30°C for 7 to 8 days (Babu and Pallavi, 2013). The isolates were identified using Barnett and Hunter (1992), method. The isolated culture was kept on PDA slant inside a refrigerator.

Climate Data

The climatic data (rainfall, relative humidity and temperature) used in this study were collected from the Micrometeorology unit, Physics Department, Obafemi Awolowo University, O.A.U, Ile-Ife, being the closest weather station to the study site.

Statistical analysis

Pearson correlation coefficient and one way analysis of variance (ANOVA) was used to study the variation on distribution pattern of fungi population between sites and seasons respectively, using SPSS version 20.


 RESULTS

The  soil  physicochemical  analysis  was   carried out for all plantation sites throughout the months of this research work and the average results obtained is presented in Table 1. While having an intercomparison of data among the sites on fungal growth profile to that of the nutrient it revealed that sites with low temperature, high moisture and better nutrient status harbored more fungi. Soil pH was highest in the control soil (7.58±023) while the lowest (5.48±0.24) was recorded in medicinal plantation. Similarly, soil organic carbon was highest in samples collected from control plantation (2.60±0.08) followed by oil palm plantation (1.39±0.17) and the lowest value was recorded in medicinal plantation (1.0±0.1). Percentage moisture content was highest from oil-palm plantation (3.45±0.39) followed by plantain plantation (3.07±0.92) and the lowest was obtained from medicinal plantations (2.45±0.65).  Statistical analysis of soil physico-chemical parameters and fungal diversity of the samples collected from different plantation locations, within the studied site showed significant variation in soil pH (F=8.369, P=0.03), soil organic carbon (F=19.460, P= 0.000), total nitrogen (F=3.124, P=0.066), and soil organic matter (F=3.497, P=0.05) (Table 2).

 

 

 

The climatic data (rainfall, relative humidity and temperature) used in this study indicated that the average weather data for Temperature of the studied areas ranged from 22.5 to 31.06°C, while the relative humidity of the studied sites ranged from 54.6 to 100%. The rainfall data obtained in this study ranged from 0.381 to 0.584 m. The results for climatic data parameters are shown in Table 3.

 

 

A total of 8 genera and 33 species were recorded in the studied plantations. Deuteromycotina was the largest phylum with 4 genera followed by Zygomycotina. The relative abundance and diversity of the microbes encountered in different plantations are indication that soils under forest cover are very rich in microorganisms that are very important for humus formation. This is responsible for the usual fertile land under forest cover. The abundance richness and diversity of the different species of fungi identified in different plantation sites are presented in (Figures 1 and 2). 

 

 

 

The Pearson correlation analysis indicated that there was a strong negative correlation between temperature and the count of Aspergillus fumigatus, as well as between temperature and the count of Aspergillus wentii. Also, there was a strong positive correlation between humidity and the count of A. fumigatus and A. wentii. Higher temperature had positive effect on the count of Trichoderma viride, while humidity had a negative effect on it. These results are shown in Tables 4, 5 and 6, respectively.

 

 

 

 

Fungal maximum load, colony forming unit (CFU) were recorded in medicinal plantation for the month of June (8×105 CFU) as shown in Table 7, followed by oil-palm plantation. The lowest microbial load was observed in the control plantation (1.1 × 105 CFU) for the month of March. More so, the results obtained from this study showed that the colony counts increases as the months for the study progresses, while the counts for the control plantation decreases as the season progressives. The results encountered in this research may be due to the increase in moisture content and low temperature which might have given room for high proliferation of the microorganisms. The results obtained in this study are represented in Tables 1 to 7 and Figures 1 and 2.

 

 

 


 CONCLUSION

The results of this study have revealed that direct and interactive impacts of seasonal variations do influence the abundance and diversity of fungi in the soil samples from the different plantation ecosystems. The results also showed that changes in rainfall pattern in particular will be vital in predicting the response of fungi community composition and abundance in the future. Further, it was found out that the interactive effect of lower temperature, maximum relative humidity and optimum rainfall data have apparent effects both directly and indirectly on fungal abundance and diversity composition. These results have illustrated complex microbial changes in community of terrestrial ecosystem under climate change scenario, and therefore, there is need for further study on the physiology and ecology of the microorganisms in terms of the effects of climate change on microbial community and how the ecosystem will respond to this change.


 CONFLICT OF INTERESTS

The authors have not declared any conflict of interests.



 REFERENCES

Anderson JM, Ingram JSI (1993). Tropical soil biology and fertility. A handbook of methods. 2nd edition. CAB international, Wallingford, UK. pp. 1-221.

 

Batten KM, Scow KM, Davies KF, Harrison SP (2006). Two invasive plants alter soil microbial community composition in serpentine grasslands. Biol. Invasions 8:217-230.
Crossref

 

Behera N, Mukherji KG (1985). Seasonal variation and distribution of micro fungi in forest soils of Delhi. Folia Geobotanica et Phytotaxonomica 20:291-312.
Crossref

 

Berg MP, Kiers ET, Driessen G, Van Der Verhoef M, Ellers J (2010). Adapt or disperse: understanding species persistence in a changing world. Glob. Chang. Biol. 16:587-598.
Crossref

 

Bhattacharyya PN, Jha DK (2011). Seasonal and depth wise variation in microfungal population numbers in Nameri forest soil, Assam, northeast India. Mycosphere 2(4):297-305.

 

Blake GR, Hartge KH (1986). Bulk density – Methods of soil analysis. Physical and Mineralogical Methods. (Klute A ed). Agronomy Monograph no. 9 (2nd edition.). pp. 363-375.

 

Brimecombe MJ, De Lelj FA, Lynch JM (2001). The Rhizosphere. The Effect of Root Exudates on RhizosphereMicrobil Populations. In: R Pinton; Z Varanini & P Nannipieri (eds.). The Rhizosphere. Biochemistry and Organic Substances at the Soil-Plant Interface. Marcel Dekker, New York. pp. 95-140.

 

Briones MJI, McNamara NP, Poskitt J, Crow SE, Ostle NJ (2014). Interactive biotic and abiotic regulators of soil carbon cycling: evidence from controlled climate experiments on peatland and boreal soils. Glob.Chang. Biol. 20:2971-2982.
Crossref

 

Broeckling CD, Broz AK, Bergelson J, Manter DK, Vivanco JM (2008). Root Exudates Regulate Soil Fungal Community Composition and Diversity. Appl. Environ. Microbiol. 74(3):738-744.
Crossref

 

Cabello M, Arambarri A (2002). Diversity in soil fungi from undisturbed and disturbed Celtis tala and Scutia bifolia forests in the eastern Buenos Aires province (Argentina). Microbiol. Res. 157:115-125.
Crossref

 

Castro HF, Classen AT, Austin EE, Norby RJ, Schadt CW (2010). Soil Microbial Community Responses to Multiple Experimental Climate Change Drivers. Appl. Environ. Microbiol. 76(4):999-1007.
Crossref

 

Crous PW (2006). How many species are there in tip of Africa? Stud. Mycol. 55:13
Crossref

 

Daily C (1997). Nature Sciences: Societal Dependence on Natural Ecosystems. Island Press, Washington DC, USA.

 

Das BB, Dkhar MS (2011). Rhizosphere microbial populations and phisico chemical properties as affected by organic and inorganic farming practices. Am- Eur. J. Agric. Environ. Sci. 10(2):140-150.

 

De Angelis KM, Pold G, Topcuoglu BD, van Diepen LTA, Varney RM, Blanchard JL, Melillo J, Frey SD (2015). Long term forest soil warming alters microbial communities in temperate forest soils. Front. Microbiol. 6:104.

 

Doran JW, Parking TB (1994). Defining and assessing soil quality. Defining Soil Quality for a Sustainable Environment (Doran JW ed). SSSA Special Publication 35. Soil Science Society of America, Madison. pp. 3-12.
Crossref

 

Garbeva P, Elsas JD, Veen JA (2008). Rhizosphere microbial community and its response to plant species and soil history. Plant Soil 302:19-32.
Crossref

 

Gourbiere F, Maanen van, Debouzie DA (2001). Associations between three fungi on pine needles and their variation along a climatic gradient. Mycol. Res.105:1101-1109.
Crossref

 

Hawksworth DL, Kirk PM, Sutton BC, Pegler DN (1996). Ainsworth and Bisby's Dictionary of the Fungi. 8th edition. CAB International, Wallingford, UK. P 616.
Crossref

 

IPCC (2007). Climate change (2007): The physical science basis. Contribution of working group I to the Fourth Assessment Report of the Intergovernemental Panel on Climate Change. Cambridge University Press, Cambridge, UK and New York.

 

Kaisermann A, Maron PA, Beaumelle L, Lata JC (2015). Fungal communities are more sensitive indicators to non-extreme soil moisture variations than bacterial communities. Appl. Soil Ecol. 86:158-164.
Crossref

 

Kardol P, Cregger MA, Campany CE, Classen AT (2010). Soil ecosystem functioning under climate change: plant species and community effects. Ecol. 91:767-781.
Crossref

 

Kopp RE, Mitrovica JX, Griffies SM, Yin J, Hay CC, Stouffer RJ (2010). The impacts of Greenland melt on local sea levels: a partially coupled analysis of dynamic and static equilibrium effects in idealized waterhosing experiments. Clim. Change 103(3-4):619-625.
Crossref

 

Mohanty RB, Panda T, Pani PK (I991). Seasonal variation and distribution of microfungi in a tropical forest soil of south Orissa. J. Ind. Bot. Soc. 70:267-271.

 

Mohanty RB, Panda T (1994a). Survey of Penicillous fungi in South Orissa soils. Pl. Sci. Res. 16(1&2):51-53.

 

Mohanty RB, Panda T (1994b). Ecological studies of the soil microfungi in a tropical forest soil of Souh Orissa in relation to deforestation and cultivation. J. Ind. Bot. Soc. 73:213-216.

 

Mohanty RB, Panda T (1998). Studies on the impact of deforestation and cultivation on the incidence of sugar fungi in a tropical forest soil of south Orissa, India. Trop. Ecol. 39(1):149-150.

 

Manoharchary C, Sridhar K, Singh RA, Adholeya A, Rawat S, Johri BN (2005). Fungal biodiversity, distribution, conservation and prospecting of fungi from India. Curr. Sci. 89(1):59-70.

 

Manoharchary C, Mohan KC, Kunwar IK, Reddy SV (2008). Phosphate solubilizing fungi associated with Casuarina equisetifolia. J. Mycol. Pl. Pathol. 38(3):507-513.

 

Nilima S, Sadika S, Nanjundiah V (2007). Diversity of soil fungi in a tropical deciduous forest in Mudumalai, Southern India. Curr. Sci. 93(5):669-677.

 

Panda T (2011). Penicillium abundance and diversity patterns associated with cashew plantations in coastal sand dunes, Odisha, India. J. Ecol. Nat. Environ. 3(6):221-227.

 

Pande A, Trivedi P, Chaurasia B, Palini LMS (2006). Soil microbial diversity from the Himalaya, Need for documentation and conservation. NBA Sci. Bull. 5:28-60.

 

Read DJ (1992). The mycorrhizal mycelium. Pages 102-133 in M. F. Allen, editor. Mycorrhizal functioning. Chapman and Hall, London.

 

Schmit JP, Mueller GM (2007). An estimate of the lower limit of global fungal diversity. Biodivers. Conserv. 16:99-111.
Crossref

 

Shivakumar BP, Thippeswamy B, Thiramalesh BV, Naveenkumar KJ (2012). Diversity of soil fungi in dry deciduous forest of Bhadra Wildlife Sanctuary, Western Ghats of Southern India. J. For. Res. 23:631-640.
Crossref

 

Subramanian CV (1986). The progress and status of mycology in India. Proceedings: Plant Sci. 96:379-392.

 

Torsvik V, Ovreas L, Thingstad TF (2002). Prokaryotic diversity - Magnitude, dynamics, and controlling factors. Sci. 296:1064-1066.
Crossref

 

Van Maanen A, Debouzie D, Gourbiere F (2000). Distribution of 3 fungi colonizing fallen Pinus sylvestris needles along altitude transect. Mycol. Res. 104:1133-1138.
Crossref

 

Yang Q, Wang X, Shen Y (2013). Comparison of soil microbial community catabolic diversity between rhizosphere and bulk soil induced by tillage or residue retention. J. Soil Sci. Plant Nutr. 13(1):187-199.
Crossref

 

Zhang J, Man B, Fu B, Liu Li, Han C (2012). The diversity of soil culturable fungi in the three alpine shrub grassland of Eastern Qilian Mountains. Front. Earth Sci. 7:76-84.
Crossref

 




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