African Journal of
Microbiology Research

  • Abbreviation: Afr. J. Microbiol. Res.
  • Language: English
  • ISSN: 1996-0808
  • DOI: 10.5897/AJMR
  • Start Year: 2007
  • Published Articles: 5165

Full Length Research Paper

Soil bacteriological pollution in pig farm vicinity: Assessment of bacterial dynamics and detection of antimicrobial resistance gene

Dikonketso Shirley-may Matjuda
  • Dikonketso Shirley-may Matjuda
  • Gastro intestinal Microbiology and Biotechnology, Agricultural Research Council- Animal Production Institute, Irene, South Africa.
  • Google Scholar
Olayinka Ayobami Aiyegoro
  • Olayinka Ayobami Aiyegoro
  • Gastro intestinal Microbiology and Biotechnology, Agricultural Research Council- Animal Production Institute, Irene, South Africa.
  • Google Scholar


  •  Received: 31 May 2016
  •  Accepted: 05 October 2016
  •  Published: 14 October 2016

References

Bezuidenhout CC, Mthembu N, Puckree T, Lin J (2002). Microbiological evaluation of the Mhlathuze River, Kwazulu-Natal (RSA). J. Water SA. 28(3):281-286.
Crossref

 

Bhat SH, Darzi AB, Dar MS, Ganaie MM, Bakhshi SH (2011). Correlation of soil physico-chemical factors with vam fungi distribution under different agroecological conditions. Int. J. Pharm. Biol. Sci. 2(2):98-107.

 
 

Chee-Sanford JC, Aminov RI, Krapac IJ, Garrigues- Jeanjean N, Mackie RI (2001). Occurrence and diversity of tetracycline genes in lagoons and groundwater underlying to swine production facilities. Appl. Environ. Microbiol. 67(4):1494-1502.
Crossref

 
 

Chee-Sanford JC, Mackie RI, Koike S, Krapac IG, Lin YF, Yannarell AC (2009). Fate and transport of antibiotic residues and antibiotic resistance genes following land application of manure waste. J. Environ. Qual. 38(3):1086-1108.
Crossref

 
 

Chen Z, Jiang X (2014). Microbiological safety of chicken litter or chicken litter-based organic fertilizers: a review. Agriculture 4(1):1-29.
Crossref

 
 

Cheng W, Chen H, Su C, Yan S (2013). Abundance and persistence of antibiotic resistance genes in livestock farms: A comprehensive investigation in eastern China. J. Environ. Int. 61(3):1-7.
Crossref

 
 

Clinical and Laboratory Standards Institute (CLSI) (2007). Methods for dilution antimicrobial susceptibility tests for bacteria that grow aerobically. Approved standard M7-A6. Wayne, PA, USA: Clinical and Laboratory Standards Institute.

 
 

Cook K, Rothrock Jr. MJ, Lonanh N, Sorrell JK, Loughring JH (2010). Spatial and temporal changes in the microbial community in an anaerobic swine waste treatment. Anaerobe 16(2):74-82.
Crossref

 
 

Ezeronye OU, Ubalua AO (2005). Studies in the effect of abattoir and industrial effluents on the heavy metals and microbial quality of Aba River in Nigeria. Afr. J. Biotechnol. 4(3):266-272.

 
 

Faldynova M, Videnska P, Havlickova H, Sisak F, Juricova H, Babak V, Steinhauser L, Rychlik I (2013). Prevalence of antibiotics resistance genes in faecal samples from cattle, pigs, and poultry. J. Vet Med. 58(6):298-304.

 
 

Heuer H, Schmitt H, Smalla K (2011). Antibiotic resistance gene spread due to manure application on agricultural fields. J. Curr. Opin. Microbiol. 14(3):236-243.
Crossref

 
 

Hong P, Yannarell AC, Dai Q, Ekizoglu M, Mackie RI (2013). Monitoring the pertubation of soil and groundwater microbial communities due to pig production activities. J. Appl. Environ. Microbiol. 79(8):2620-2629.
Crossref

 
 

Hsu WB, Wang JH, Chen PC, Lu YS, and Chen JH (2007). Detecting low concentrations of Shigella sonnei in environmental water samples by PCR. Microbiol. Lett. 270(2):291-298.
Crossref

 
 

Jamieson RC, Gordon RJ, Sharples KE, Stratton GW, Madani A (2002). Movement and persistence of fecal bacteria in agricultural soils and subsurface drainage water: A review. Can. Biosys. Eng. 44:1-19.

 
 

Jánošková A, KmeÅ¥ V (2004). Vancomycin resistance genes in Enterococcus spp. Strains isolated from alpine accentor and chamois. J. Microbiol. 73(2):211-214.
Crossref

 
 

Jiang X, Zhang Z, Li M, Zhou D, Ruan F, Lu Y (2006). Detection of extended-spectrum beta-lactamases in clinical isolates of Pseudomonas aeruginosa. J. Antimicrob Agents Chemother. 50(7):2990-2995.
Crossref

 
 

Kainer MA, Devasia RA, Jones TF, Simmons BP, Melton K, Chow S, Broyles J, Moore KL, Craig AS, Schaffner W (2007). Response to emerging infection leading to outbreak of linezolid-resistant enterococci. J. Emerg. Infect. Dis. 13(7):1024-1030.
Crossref

 
 

Kotzamanidis C, Zdragas A, Kourelis A, Moraitou E, Papa A, Yiantzi V, Pantelidou C, Yiangou M (2009). Characterization of VanA type Enterococcus faecium isolates from urban and hospital wastewater and pigs. J. Appl. Microbiol. 107(3):997-1005.
Crossref

 
 

Krista DL, Kerr A, Jones MC, Caracciolo JA, Eskridge B, Jordan M, Miller S, Hughes D, King N, Gilligan PH (1996). Accuracy of four commercial systems for identification of Burkholderia cepacia and other gram-negative nonfermenting bacilli recovered from patients with cystic fibrosis. J. Clin. Microbiol. 34(4):886-891.

 
 

Krumperman PH (1983). Multiple antibiotics resistance indexing of Escherichia coli to identify high-risk sources of fecal contamination of foods. J. Appl. Environmen. Microbiol. 46(1):165-170.

 
 

Kumar K, Gupta SC, Chander Y, Singh AK (2005). Antibiotic use in agriculture and its impact on the terrestrial environment. J. Adv. Agron. 87(2):1-54.
Crossref

 
 

Kumar S, Tripathi VR, Garg SK (2013). Antibiotic resistance and genetic diversity in water-borne Enterobacteriaceae isolates from recreational and drinking water sources. Int. J. Environ. Sci. Technol. 10(4):789-798.
Crossref

 
 

Li L, Sun J, Liu B, Zhao D, Ma J, Deng H, Li X, Hu F, Liao X, Liu Y (2013). Quantification of lincomycin resistance genes associated with lincomycin residues in waters and soils adjacent to representative swine farms in China. J. Environ. Contamin. Tox. 4:364-372.
Crossref

 
 

Łuczkiewicz A, Quant B (2007). Soil and groundwater fecal contamination as a result of sewage sludge land application. Pol. J. Environ. Stud. 16(4):587-593.

 
 

Muniesa M, Hammerl JA, Hertwig S, Appel B, Brüssow H (2012). Shiga Toxin-Producing Escherichia coli O104:H4: A New Challenge for Microbiology. J. Appl. Environ. Microbiol. 78(12):4065-4073.
Crossref

 
 

Nikolakopoulou TL, Egan S, van Overbeek LS, Guillaume G, Heuer H, Wellington EMH, van Elsas JD, Collard J, Smalla K, Karagouni AD (2005). PCR detection of oxytetracycline resistance genes otrA and otrB in tetracycline-resistant Streptomycete isolates from Diverse Habitats. J. Curr. Microbiol. 51(4):211-216.
Crossref

 
 

Obasi LN, Nwadinigwe CA, Asegbeke JN (2008). Study of trace heavy metal in fluted pumpkin leaves grown on soil treated with sewage sludge and effluents. Proceedings 31st International Conference of C.S.N Petroleum Training Institute (PTI) Conference Centre Complex Warri, Pp. 241-244.

 
 

Pandey PK, Kass PH, Soupir ML, Biswas S, Singh VP (2014). Contamination of water resources by pathogenic bacteria. AMB Express 4:51-67.
Crossref

 
 

Ramírez G, Martínez R, Herradora M, Castrejón F, Galvan E (2005). Isolation of Salmonella spp. from liquid and solid excreta prior to and following ensilage in ten swine farms located in central Mexico. J. Bioresour. Technol. 96(5):587-595.
Crossref

 
 

Roberts MC (2005). Update on acquired tetracycline resistance genes. FEMS Microbiol. Let. 245(2):195-203.
Crossref

 
 

Sasáková N, Juriš P, Papajová I, Vargová M, Venglovský J, Ondrašovičová O, Ondrašovič M (2007). Bacteriological and parasitological risks associated with agricultural wastewaters and sewage subjected to biological treatment. XIII International Congress in Animal Hygiene, Pp. 985-989.

 
 

Schulz J, Friese A, Klees S, Tenhagen BA, Fetsch A, Rösler U, Hartung J (2012). Longitudinal Study of the Contamination of Air and of Soil Surfaces in the Vicinity of Pig Barns by Livestock-Associated Methicillin-Resistant Staphylococcus aureus. J. Appl. Environ. Microbiol. 78(16):5666-5671.
Crossref

 
 

Strateva T, Ouzounova-Raykova V, Markova B, Todorova A, Marteva-Proevska Y, Mitov I (2007). Widespread detection of VEB-1-type extended spectrum β-lactamases among nosocomial ceftazidime-resistant Pseudomonas aeruginosa isolates in Sofia, Bulgaria. J. Chemother. 19(2):140-145.
Crossref

 
 

Tymczyna L, Chmielowiec-Korzeniowska A, Saba L (2000). Bacteriological and parasitological pollution of the natural environment in the vicinity of pig farm. Pol. J. Environ. Stud. 9(3):209-214.

 
 

Tyrrel SF, Quinton JN (2003). Overland flow transport of pathogens from agricultural land receiving faecal wastes. J. Appl. Microbiol. 94:87-93.
Crossref

 
 

Vakulenko SB, Donabedian SM, Voskresenskiy AM, Zervos, MJ, Lerner ST, Chow JW (2003). Multiplex PCR for the detection of aminoglycoside resistance genes in enterococci. J. Antimicrob. Agents Chemother. 47(4):1423-1426.
Crossref

 
 

Werner G, Coque TM, Hammerum AM, Hope R, Hryniewicz W, Johnson A (2008). Emergence and spread of vancomycin resistance among enterococci in Europe. J. Eur. Surv. 13(47):256-367.

 
 

Zhu YG, Johnson TA, Su JQ, Qiao M, Guo GX, Stedtfeld RD (2013). Diverse and abundant antibiotic resistance genes in Chinese swine farms. Proc. Natl. Acad. Sci. 110(9):3435-3440.
Crossref