African Journal of
Plant Science

  • Abbreviation: Afr. J. Plant Sci.
  • Language: English
  • ISSN: 1996-0824
  • DOI: 10.5897/AJPS
  • Start Year: 2007
  • Published Articles: 761

Full Length Research Paper

A DNA-barcode for Melia volkensii Gürke (Meliaceae) and its phylogenetic relationship with some economically important relatives

Eliud S. Mulanda*
  • Eliud S. Mulanda*
  • Molecular Biology Lab, School of Biological Sciences, University of Nairobi, P.O Box 30197-00100 Nairobi, Kenya.
  • Google Scholar
Ryan M. Awori
  • Ryan M. Awori
  • Molecular Biology Lab, School of Biological Sciences, University of Nairobi, P.O Box 30197-00100 Nairobi, Kenya.
  • Google Scholar
Yeremiah Chuhila
  • Yeremiah Chuhila
  • Department of Zoology and Wildlife Conservation, College of Natural and Applied Sciences, University of Dar es Salaam, P.O. Box 35064 Dar es Salaam, Tanzania.
  • Google Scholar
Mark O. Adero
  • Mark O. Adero
  • Molecular Biology Lab, School of Biological Sciences, University of Nairobi, P.O Box 30197-00100 Nairobi, Kenya.
  • Google Scholar
Nelson O. Amugune
  • Nelson O. Amugune
  • Molecular Biology Lab, School of Biological Sciences, University of Nairobi, P.O Box 30197-00100 Nairobi, Kenya.
  • Google Scholar
Elijah Akunda
  • Elijah Akunda
  • Molecular Biology Lab, School of Biological Sciences, University of Nairobi, P.O Box 30197-00100 Nairobi, Kenya.
  • Google Scholar
Jenesio I. Kinyamario
  • Jenesio I. Kinyamario
  • Molecular Biology Lab, School of Biological Sciences, University of Nairobi, P.O Box 30197-00100 Nairobi, Kenya.
  • Google Scholar


  •  Received: 31 December 2015
  •  Accepted: 01 March 2016
  •  Published: 31 March 2016

References

Barthet MM, Hilu KW (2007). Expression of matK: functional and evolutionary implications. Am. J. Bot. 94(8):1402-1412.
Crossref

 

CBOL Plant Working Group (2009). A DNA barcoding for land plants. Proc. Natl. Acad. Sci. USA. 106(31):12794-12797.
Crossref

 

Doyle JJ, Doyle JL (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19:11-15.

 

Edgar RC (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32(5):1792-1797.
Crossref

 

Fay MF, Bayer C, Alverson WS, De Bruijn AY, Chase MW (1998). Plastid rbcL sequence data indicate a close affinity between Diegodendron and Bixa. Taxon 47:43-50.
Crossref

 

Fazekas AJ, Kuzmina ML, Newmaster SG, Hollingsworth PM (2012). DNA barcoding methods for land plants. In: DNA barcodes. Humana Press. pp. 223-252.
Crossref

 

Felsenstein J (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791.
Crossref

 

Ferri G, Alu M, Corradini B, Angot A, Beduschi G (2008). Land plants identification in forensic botany: multigene barcoding approach. Forensic Sci. Int. (Genetics Supplement Series) 1(1):593-595.
Crossref

 

Ferri G, Corradini B, Ferrari F, Santunione AL, Palazzoli F, Alu' M (2015). Forensic botany II, DNA barcode for land plants: Which markers after the international agreement? Forensic Sci. Int. Genet. 15:131-136.
Crossref

 

Hausner G, Olson R, Simon D, Johnson I, Snaders ER, Karol KG, McCourt RM, Zimmerly S (2006). Origin and evolution of the chloroplast trnk (matK) intron: A model for evolution of group II intron RNA structures. Mol. Biol. Evol. 23(2):380-391.
Crossref

 

Hebert PDN, Cywinska A, Ball SL, DeWaard JR (2003) Biological identification through DNA barcodes. Proc. Soc. Lond. B Biol. 270:313-321.

 

Hilu KW, Liang H (1997). The matK gene: sequence variation and application in plant systematics. Am. J. Bot. 84:830-839.
Crossref

 

Hollingsworth PM, Graham SW, Little DP (2011). Choosing and Using a Plant DNA Barcode. PLoS ONE 6(5):e19254.
Crossref

 

Johnson LA, Soltis DE (1994). matK DNA sequences and phylogenetic reconstruction in Saxifragaceae s. str. Syst. Bot. 19:143-156.
Crossref

 

Kress WJ, Erickson DL, Jones FA, Swenson NG, Perez R, Sanjur O, Bermingham E (2009). Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama. Proc. Natl. Acad. Sci. USA. 106(44):18621-6.
Crossref

 

Kress WJ, Garcia-Robledo C, Uriarte M, Erickson DL (2015). DNA barcodes for ecology, evolution, and conservation. Trends Ecol. Evolut. 30(1):25-35.
Crossref

 

Kress WJ, Wurdack KJ Zimmer EA, Weigt L A, Janzen DH (2005). Use of DNA barcodes to identify flowering plants. Proc. Natl. Acad. Sci. USA. 102(23):8369-8374.
Crossref

 

Kritpetcharat O, Khemtonglang N, Kritpetcharat P, Daduang J, Daduang S, Suwanrungruang K, Bletter N, Sudmoon R, Chaveerach A (2011). Using DNA markers and barcoding to solve the common problem of identifying dried medicinal plants with the examples of Smilax and Cissus in Thailand. J. Med. Plants Res. 5(15):3480-3487.

 

Kuzmina ML, Johnson KL, Barron HR, Hebert PDN (2012). Identification of the vascular plants of Churchill, Manitoba, using a DNA barcode library. BMC Ecol. 12:25.
Crossref

 

Li, FW, Kuo LY, Rothfels CJ, Ebihara A, Chiou WL, Windham MD, Pryer KM (2011). rbcL and matK Earn Two Thumbs Up as the Core DNA Barcode for Ferns. PLoS ONE 6(10):e26597.
Crossref

 

Mankga LT, Yessoufou K, Moteetee AM, Daru BH, van der Bank M (2013). Efficacy of the core DNA barcodes in identifying processed and poorly conserved plant materials commonly used in South African traditional medicine. ZooKeys 365:215-233.
Crossref

 

Mishra P, Kumar Amit, Nagireddy A, Mani DN, Shukla AK, Tiwari R, Sundaresan V (2016). DNA barcoding: an efficient tool to overcome authentication challenges in the herbal market. Plant Biotechnol. J. 14:8-21.
Crossref

 

Nei M, Kumar S (2000). Molecular Evolution and Phylogenetics. Oxford University Press, New York.

 

Newmaster SG, Ragupathy S (2009). Ethnobotany genomics – use of DNA barcoding to explore cryptic diversity in economically important plants. Indian J. Sci. Technol. 2(5):1-8.

 

Orwa C, Mutua A, Kindt R, Jamnadass R, Simons A (2009). Agroforestree Database: a tree reference and selection guide version 4.0, World Agroforestry Centre, Kenya. 

 

Rambaut A (2012). FigTree 1.4. FigTree: Tree Figure Drawing Tool Version 1.4. Edinburgh, Scotland: University of Edinburgh.

 

Rohwer JG (2000). Towards a phylogenetic classification of the Lauraceae; Evidence from matK sequences. Syst. Bot. 25(1):60-71.
Crossref

 

Steane DA (2005). Complete nucleotide sequence of the chloroplast genome from the Tasmanian blue gum, Eucalyptus globulus (Myrtaceae). DNA Res. 12:215-220.
Crossref

 

Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013). MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol. Biol. Evol. 30(12):2725-2729.
Crossref

 

Vijayan K, Tsou CH (2015). DNA barcoding in plants: taxonomy in a new perspective. Curr. Sci. 99(11):1530-1541.

 

Vogel J, Hübschmann T, Börner T, Hess WR (1997). Splicing and intron internal RNA editing of trnK-matK transcripts in barley plastids: support for matK as an essential splice factor. J. Mol. Biol. 270:179-187.
Crossref

 

Wiart C (2006). Medicinal plants of the Asia-Pacific: Drugs for the future? World Scientific Publishing Co. Ltd., Singapore.