Journal of
Computational Biology and Bioinformatics Research

  • Abbreviation: J. Comput. Biol. Bioinform. Res
  • Language: English
  • ISSN: 2141-2227
  • DOI: 10.5897/JCBBR
  • Start Year: 2009
  • Published Articles: 41

Full Length Research Paper

Computational sequence analysis and in silico modeling of a stripe rust resistance protein encoded by wheat TaHSC70 gene

Zarrin Basharat
  • Zarrin Basharat
  • Microbiology and Biotechnology Research Lab, Department of Environmental Sciences, Fatima Jinnah Women University, 46000, Pakistan.
  • Google Scholar


  •  Accepted: 27 April 2015
  •  Published: 30 May 2015

References

Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990). Basic local alignment search tool. J. Mol. Biol. 215 (3):403-410.
Crossref
 
Alvim FC (2001). Enhanced accumulation of BiP in transgenic plants confers tolerance to water stress. Plant Physiol. 126:1042-1054.
Crossref
 
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE (2000). The Protein Data Bank. Nucleic Acids Res. 28 (1):235-242.
Crossref
 
Bhadula SK, Elthon TE, Habben JE, Helentjaris TG, Jiao S, Ristic Z (2001). Heat-stress induced synthesis of chloroplast protein synthesis elongation factor (EF-Tu) in a heat-tolerant maize line. Planta 212(3):359-366.
Crossref
 
Blom N, Gammeltoft S, Brunak S (1999). Sequence and structure-based prediction of eukaryotic protein phosphorylation sites. J. Mo. Biol. 294(5):1351-1362.
Crossref
 
Colovos C, Yeates TO (1993). Verification of protein structures: patterns of nonbonded atomic interactions. Protein Sci. 2(9):1511-1519.
Crossref
 
Daugaard M, Rohde M, Jäättelä M (2007). The heat shock protein 70 family: Highly homologous proteins with overlapping and distinct functions. FEBS Lett. 581(19):3702-3710.
Crossref
 
Duan YH, Guo J, Ding K, Wang SJ, Zhang H, Dai XW, Chen YY, Govers F, Huang LL, Kang ZS (2011). Characterization of a wheat HSP70 gene and its expression in response to stripe rust infection and abiotic stresses. Mol. Biol. Rep. 38(1):301-307.
Crossref
 
EfeoÄŸlu B, Ekmekci Y, Cicek N (2009). Physiological responses of three maize cultivars to drought stress and recovery. S. Afr. J. Bot. 75(1):34-42.
Crossref
 
Eswar N, Eramian D, Webb B, Shen M, Sali A (2008). Protein structure modelling with MODELLER. Methods. J Mol Biol. 426:145-159.
 
Feng PM, Chen W, Lin H, Chou KC. (2013). iHSP-PseRAAAC: Identifying the heat shock protein families using pseudo reduced amino acid alphabet composition. Anal. Biochem. 442(1):118-125.
Crossref
 
Fiser A, Sali A (2003). Modeller: generation and refinement of homology-based protein structure models. Methods Enzymol. 374:461-491.
Crossref
 
Guex N, Peitsch MC (1997). SWISS‐MODEL and the Swiss‐Pdb Viewer: an environment for comparative protein modeling. Electrophoresis 18(15):2714-2723.
Crossref
 
Guo M, Zhai YF, Lu JP, Chai L, Chai WG, Gong ZH, Lu MH. (2014). Characterization of CaHsp70-1, a Pepper Heat-Shock Protein Gene in Response to Heat Stress and Some Regulation Exogenous Substances in Capsicum annuum L. Int. J. Mol. Sci. 15(11):19741-19759.
Crossref
 
Guy CL, Li QB (1998). The organization and evolution of thenspinach stress 70 molecular chaperone gene family. Plant Cell. 10:539-556.
Crossref
 
Jego G, Hazoumé A, Seigneuric R, Garrido C. (2013). Targeting heat shock proteins in cancer. Cancer Lett. 332(2): 275-285.
Crossref
 
Kumar RR, Rai RD (2014). Can Wheat Beat the Heat: Understanding the Mechanism of Thermotolerance in Wheat (Triticum aestivum L.). Cereal Res. Commun. 42(1):1-18.
Crossref
 
Laskowski RA, MacArthur MW, Moss DS, Thornton JM (1993). PROCHECK: A program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26:283-291.
Crossref
 
Martí-Renom MA, Stuart AC, Fiser A, Sánchez R, Melo F, Šali A (2000). Comparative protein structure modeling of genes and genomes. Annu. Rev. Biophys. Biomol. Struct. 29(1): 291-325.
Crossref
 
May T, Soll J (2000). 14-3-3 proteins form a guidance complex with chloroplast precursor proteins in plants. Plant Cell Online 12(1):53-63.
Crossref
 
Morris AL, MacArthur MW, Hutchinson EG, Thornton JM (1992). Stereochemical quality of protein structure coordinates. Proteins 12 (4): 345-364.
Crossref
 
Ramachandran GN, Ramakrishnan C, Sasisekharan V (1963). Stereochemistry of polypeptide chain configurations. J. Mol. Biol. 7:95-99.
Crossref
 
Safdar W, Majeed H, Ali B, Naveed I (2012). Molecular evolution and diversity of small heat shock proteins genes in plants. Pak. J. Bot. 44:211-218.
 
Sali A, Blundell TL (1993). Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol. 234 (3): 779–815.
Crossref
 
Sarkar NK, Kundnani P, Grover A (2013). Functional analysis of Hsp70 superfamily proteins of rice (Oryza sativa). Cell Stress Chaperones 18(4):427-437.
Crossref
 
Usman MG, Rafii MY, Ismail MR, Malek MA, Latif MA, Oladosu Y (2014). Heat Shock Proteins: Functions And Response Against Heat Stress In Plants. Int. J. Sci. Technol. Res. 3(11):204-218.
 
Wang X, Gou M, Bu H, Zhang S, Wang G (2014). Proteomic analysis of Arabidopsis constitutive expresser of pathogenesis-related gene1 (Cpr30/cpr1-2) mutant. Plant Omics J. 7(3): 142-151.