November 2011

Advancement in computational analysis methods of plant antifreeze proteins (AFPs): An application towards classification and gene expression studies of leucine rich repeat (LRR) and ice-recrystallization inhibition domain (IRI) containing AFPs

Gene sequence analysis is a key-step for genomic research, which help to understand the genome of species once it has been sequenced. It includes pair-wise, comparative or multiple sequence analysis. The Genome On-Line Database (GOLD) provides information about the number of completed, meta, incomplete and targeted genome projects. The statistics of GOLD show 2942 of completed, 7687 of incomplete, 340 of meta...

Author(s): J. Muthukumaran, P. Manivel, M. Kannan, J. Jeyakanthan   and R. Krishna

November 2011

Querying formal concepts containing transcription factors: A case study using multiple databases

In order to reduce the amount of information when querying from large databases, one has to develop new approaches. We present here a new way to query our SQUAT database. SQUAT contains formal concepts representing an association between a number of genes that are simultaneously over expressed and the biological situations in which those genes are over expressed. We explored the relevance of querying...

Author(s): Mathilde Pellerin, and Olivier Gandrillon