African Journal of
Agricultural Research

  • Abbreviation: Afr. J. Agric. Res.
  • Language: English
  • ISSN: 1991-637X
  • DOI: 10.5897/AJAR
  • Start Year: 2006
  • Published Articles: 6574

Full Length Research Paper

Isolation, identification and molecular characterization of Rhizobium species from Sesbania bispinosa cultivated in Bangladesh

Nusrat Nahar
  • Nusrat Nahar
  • Department of Microbiology, University of Dhaka, Dhaka-1000, Bangladesh.
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Anowara Begum
  • Anowara Begum
  • Department of Microbiology, University of Dhaka, Dhaka-1000, Bangladesh.
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Humaira Akhter
  • Humaira Akhter
  • Department of Microbiology, University of Dhaka, Dhaka-1000, Bangladesh.
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  •  Received: 20 March 2017
  •  Accepted: 20 April 2017
  •  Published: 01 June 2017

Abstract

The investigation was carried out to study the characteristics of rhizobial strains isolated from the leguminous plant, Sesbania bispinosa growing in different regions of Bangladesh. Forty-four isolates were studied for biochemical and molecular characteristics. Isolates were able to utilize different carbohydrates. All isolates showed complete resistance to cloxacillin and penicillin G that results in increased survivability of rhizobial populations in antibiotic stressed conditions. Isolates were able to form nodule in the plant infection test. The majority of the strains showed positive results for nodC and nifH gene amplification which are the typical characteristics of Rhizobium species. Genetic relatedness was assessed by comparing the sequences of 16S rRNA. Two distinct clusters were seen in the dendrogram constructed by the Complete Linkage method. The isolates R7, R8, R17, R33 and R3 were distinct from the 20 reference strains. The first cluster was phylogenetically distinct from the reference strains and might have evolved from a distinct lineage. Isolate R4 was placed adjacent to Rhizobium cnuense. So, the findings may represent new species of Rhizobium. This study helps to identify an ideal strain of Rhizobium from S. bispinosa that can be function as biofertilizer when released in the soil and contribute to sustainable agricultural practices by improving yields. 

 

Key words: Rhizobium, Sesbania bispinosa, nodulation gene, nitrogen fixation gene, sequencing.