African Journal of
Biotechnology

  • Abbreviation: Afr. J. Biotechnol.
  • Language: English
  • ISSN: 1684-5315
  • DOI: 10.5897/AJB
  • Start Year: 2002
  • Published Articles: 12488

Full Length Research Paper

In silico modeling of lipase H

  Ammara Jabeen1, Asif Mir2, Nyla Jabeen3, Jabar Zaman Khan Khattak2 and Naveeda Riaz3*        
  [1]Department of Biosciences, COMSATS Institute of Information Technology, Sahiwal, Pakistan. 2Department of Biotechnology and Bioinformatics, International Islamic University (Male campus), Islamabad, Pakistan. 3Department of Biotechnology and Bioinformatics, International Islamic University (Female campus), Islamabad, Pakistan.
Email: [email protected]

  •  Accepted: 30 September 2011
  •  Published: 17 April 2013

Abstract

 

LAH 2 is a type of autosomal recessive hypotrichosis that affect hairs, eyebrows, scalp and eyelashes. Mutations in Lipase H gene result in LAH 2. Changes that result from mutation on physiochemical properties, post-translational modifications, functional sites, secondary structure and tertiary structure lipase H gene (LIPH) at molecular level were analyzed in the current study. Results indicate that the 3rd motif of LIPH deletes as a result of mutation. The number of alpha helices and beta sheets become varied in normal and abnormal protein. Tertiary structure of LIPH was predicted through homology modeling. Mutations were then inserted to reveal the difference between normal and abnormal structure. Ligands to target LIPH are also retrieved. ASP178, ASP207 and HIS248 constitute the active site of LIPH. Missense mutations in LIPH also brought drastic changes at molecular level that led to imbalanced function. All these changes can be studied through bioinformatics without going for expensive laborious and time consuming experimental techniques.

 

Key words: LAH2, LIPH, tertiary structure, secondary structure, physiochemical properties, ligands, active site.