African Journal of
Biotechnology

  • Abbreviation: Afr. J. Biotechnol.
  • Language: English
  • ISSN: 1684-5315
  • DOI: 10.5897/AJB
  • Start Year: 2002
  • Published Articles: 12487

Full Length Research Paper

Phylogenetic relationships of Chaetomium isolates based on the internal transcribed spacer region of the rRNA gene cluster

Rashmi Aggarwal1*, Lalit L. Kharbikar2, Sapna Sharma1, Sangeeta Gupta1 and Anita Yadav3
  1Fungal Molecular Biology Laboratory, Division of Plant Pathology, Indian Agricultural Research Institute, New Delhi-110 012, India. 2Biotechnology Laboratory, Division of Crop Improvement, Central Research Institute for Jute and Allied Fibres (ICAR), Barrackpore, Kolkata - 700 120, India. 3Department of Biotechnology, Kurukshetra University, Kurukshetra, Haryana, India.
Email: [email protected]

  •  Accepted: 01 February 2013
  •  Published: 27 February 2013

Abstract

 

Molecular characterization of 18 Chaetomium isolates collected from India based on the internal transcribed spacer (ITS) region of the rRNA gene sequences was done. Phylogenetic analysis of full length ITS region showed that Chaetomium globosumisolates, Cg1, Cg2, Cg6, Cg11 and Cg15, Chaetomium spp. isolates, C16, C17 and aChaetomium perlucidum isolate formed a group with American isolates ofChaetomium spp., SW287, SW271 and CL024, thereby supporting the close relationships among these isolates. Other C. globosum isolates, Cg3, Cg4, Cg5, Cg10, Cg12, Cg13 and Cg14 clustered with European isolates, UOA/HCPF 9215 and UOA/HCPF 9860 and an Australian isolate NC1. Isolates Cg7, Cg8, and Cg9 were closely related to the Australian isolates but distantly related to the isolates from New Zealand. However, all these isolates clustered in the same Australia group as evident in the evolutionary history analysis using parsimony method. European isolate MU-2009 and Australian isolates NA26 were separated from the rest of the isolates and did not cluster in any of the groups formed. Results indicate that, different isolates of the Chaetomium spp. may have different life strategies and specialized in surviving diverse climates.

 

Key words: Chaetomium, rRNA sequences, internal transcribed spacer (ITS), phylogeny.