African Journal of
Biotechnology

  • Abbreviation: Afr. J. Biotechnol.
  • Language: English
  • ISSN: 1684-5315
  • DOI: 10.5897/AJB
  • Start Year: 2002
  • Published Articles: 12487

Full Length Research Paper

Comparison of gene expression profiles in Bacillus megaterium treated tobacco leaves using microarray

Min Zhao1, Chang-Guo Wang1, JinLiu2, Ming-Yu Kou1, Ning Li1, Yan Wu1, Ya Dai1* and Qing-You Xia2*
1Sichuan Key Laboratory, Chengdu 610066, China. 2College of Biotechnology, Southwest University, Chongqing 400715, China.
Email: [email protected], [email protected]

  •  Accepted: 19 December 2012
  •  Published: 18 December 2013

Abstract

The MP agent, prepared from Bacillus megaterium isolated from the soil near tobacco fields, can improve metabolic products, and hence the aroma, of tobacco (Nicotiana tabacum) leaf. To explore genes regulating metabolic responses in tobacco leaf, we used microarrays to analyze differentially expressed genes in tobacco leaves subjected to various treatments. The expressed genes were classified into six groups based on their expression profile. In total, 753 genes were significantly differentially expressed between microorganism-treated and water-treated samples. Gene ontology (GO) analyses showed that most of these genes were involved in metabolic and cellular processes. Some up-regulated genes were related to the plant defense response, such as NtMMP1 and NtACRE231. Some genes were involved in metabolism responses, such as NtDXS. Semi-quantitative reverse transcriptase (RT)-PCR analysis of NtMMP1 and quantitative RT-PCR analysis of NtDXS showed that their expression levels increased after MP agent treatment, confirming the microarray results. We evaluated NtMMP1 and NtDXS in terms of their associations with Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways. Phylogenetic analyses of NtMMP1, NtACRE231, and NtDXS revealed their relationships with homologs in other species. These microarray data increase our understanding of the mechanisms by which MP agent induces a metabolic response in tobacco leaves

 

Key words: Nicotiana tabacum, Microarray, MP agent, plant defense response, aroma.