African Journal of
Biotechnology

  • Abbreviation: Afr. J. Biotechnol.
  • Language: English
  • ISSN: 1684-5315
  • DOI: 10.5897/AJB
  • Start Year: 2002
  • Published Articles: 12487

Full Length Research Paper

Simple sequence repeats (SSR) and interspersed sequence repeats (ISSR) markers for genetic diversity analysis among selected genotypes of Gossypium arboreum race ‘bengalense’

Khushboo Sethi
  • Khushboo Sethi
  • Deparment of Biotechnology, Chaudhary Devi Lal University, Sirsa, Haryana, India.
  • Google Scholar
Priyanka Siwach*
  • Priyanka Siwach*
  • Deparment of Biotechnology, Chaudhary Devi Lal University, Sirsa, Haryana, India.
  • Google Scholar
Surender Kumar Verma
  • Surender Kumar Verma
  • Central Institute of Cotton Research, Regional Station, Sirsa, Haryana, India.
  • Google Scholar


  •  Received: 22 July 2015
  •  Accepted: 19 November 2015
  •  Published: 06 January 2016

References

Akhtar KP, Haidar S, Khan MKR, Ahmad M, Sarwar N (2010). Evaluation of Gossypium species for resistance to cotton leaf curl Burewela virus. Ann. Appl. Biol. 157:135-147.
Crossref

 

Anderson JA, Churchill GA, Autrique JE, Tanksley SD, Sorells ME (1993). Optimizing parental selection for genetic linkage maps. Genome 36:181-186.
Crossref

 
 

Anna Serra I, Procaccini G, Carmela Intrieri M, Migliaccio M, Mazzuca S, Maria Innocenti A (2007). Comparison of ISSR and SSR markers for analysis of genetic diversity in sea grass (Posidonia aceanica). Mar. Ecol. Prog. Ser. 338:71-79.
Crossref

 
 

Bardak A, Bolek Y (2012). Genetic diversity of diploid and tetraploid cottons by SSR and ISSR markers. Turk. J. Field Crops 17:139-144.

 
 

Belaj A, Satovic Z, Cipriani G, Baldoni L, Testolin R, Rallo L, Trujillo I (2003). Comparative study of the discriminating capacity of RAPD, AFLP and SSR markers and of their effectiveness in establishing genetic relationships in olive. Theor. Appl. Genet. 107:736-744.
Crossref

 
 

Deosarkar VD, Gupta DB, Gaikwad DB (2010). Genetic diversity studies in intra-specific desi cotton (G. arboreum) through DNA marker. J. Cotton Res. Dev. 24:133-137.

 
 

Dhawan AK, Simwat GS, Sidhu AS (1991). Field reaction of some varieties of Asiatic Cotton (Gossypium arboreum L.) to sucking and boll worm pests. J. Res. Punjab Agric. Univ. 28: 57-62.

 
 

Dongre AB, Ramteke DM, Bhandarkar MR, Raut MP, Meshram KJ (2011). Genetic diversity analysis of Gossypium arboreum (diploid cotton) cultivars revealed by PCR based molecular markers. J. Cotton Res. Dev. 25:1-8.

 
 

Gupta PK, Varshney RK, Prasad M (2002). Molecular markers: principles and methodology. In: SM Jain, BS Ahloowalia, DS Brar, Eds. Molecular techniques in crop improvement. Kluwer Academic Publishers, Netherlands, pp. 9-54.
Crossref

 
 

Jaccard P (1908). Nouvelles recherche sur la distribution florale. Bulletin de la societe vaudoise des sciences naturelles 44:223-270.

 
 

Jain S, Jain RK, McCouch S (2004). Genetic analysis of Indian aromatic and quality rice (Oryza sativa L.) germplasm using panels of fluoroscently labeled microsatellite markers. Theor. Appl. Genet.109:965-977.
Crossref

 
 

Kantartzi SK, Ulloa M, Sacks E, Stewart JM (2009). Assessing genetic diversity in Gossypium arboreum L. cultivars using genomic and EST-derived microsatellites. Genetica 136:141-147.
Crossref

 
 

Kulkarni VN, Khadi BM, Manjula S, Lalitadas M, Deshapande A, Narayanan SS (2009). The Worldwide Gene Pools of Gossypium arboreum L. and G. herbaceum L. and their Improvement, In: AH Paterson ed, Genet. Genomics Cotton. Vol 3, pp. 69-100.
Crossref

 
 

Kumar P, Gupta VK, Misra AK, Modi DR, Pandey BK (2009). Potential of molecular markers in Plant Biotechnology. Plant Omics J. 2:141-162.

 
 

Mantel N (1967). The detection of disease clustering and a generalized regression approach. Cancer Res. 27:209-220.

 
 

Masi P, Spagnoletti Zeuli PL, Donini P (2003). Development and analysis of multiplex microsatellite markers sets in common bean (Phaseolus vulgaris L.). Mol. Breed. 11:303-313.
Crossref

 
 

Mohan P, Mukewar PM, Singh VV, Singh P, Khadi BM, Amudha J, Deshpande VG (2006). Identification of sources of resistance to grey mildew disease (Ramularia areola) in diploid cotton (Gossypium arboreum). CICR Technical Bulletin No: 34, pp. 1-26.

 
 

Mukherjee A, Sikdar B, Ghosh B, Banerjee A, Ghosh E, Bhattacharya M, Roy SC (2013). RAPD and ISSR analysis of some economically important species, varieties, and cultivars of the genus Allium (Alliaceae). Turk J. Bot. 37:605-618.
Crossref

 
 

Myskow B, Milczarski and Masoje P (2010). Comparison of RAPD, ISSR and SSR markers in assessing genetic diversity among rye (Secale cereale L.) inbred lines. Plant Breed. Seed Sci. 62:107-115.

 
 

Nibouche S, Brevault T, Klassou C, Dessauw D, Hau B (2008). Assessment of the resistance of cotton germplasm (Gossypium spp.) to aphids (Homoptera, Aphididae) and leafhoppers (Homoptera: Cicadellidae, Typhlocybinae): methodology and genetic variability. Plant Breed. 127:376-382.
Crossref

 
 

Noormohammadi Z, Farahani YHA, Sheidai M, Baraki SG, Alishah O (2013b). Genetic diversity analysis in opal cotton hybrids based on SSR, ISSR and RAPD markers. Genet. Mol. Res. 12:256-269.
Crossref

 
 

Noormohammadi Z, Taghavi E, Foroutan M, Sheidai M, Alishah O (2013a). Structure analysis of genetic diversity in tetraploid and diploid cotton genotypes. Int. J. Plant Animal Environ. Sci. 3:79-90.

 
 

Powell W, Morgante M, Andre C, Hanafey M, Vogel J, Tingey J, Rafalski A (1996). The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol. Breed. 2:225-238.
Crossref

 
 

Rohlf FJ (2000). NTSYS-pc: Numerical Taxonomy System. Ver. 2.1. Exeter Software, Setauket, NY, USA. pp. 29-34.

 
 

Saghai-Maroof MA, Soliman KM, Jorgensen RA, Allard RW (1984). Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location and population dynamics. Proc. Natl. Acad. Sci. U.S.A 81:8014-8018.
Crossref

 
 

Sheidai M, Noormohammadi Z, Shojaei-Jesvaghani F, Baraki SG, Farahani F, Alishah O (2012). SSR (Simple sequence repeat) and ISSR (Inter simple sequence repeat) analysis of genetic diversity in tissue regenerated plants of cotton. Afr. J. Biotechnol. 11(56):11894-11900.

 
 

Singh A, Dikshit HK, Jain N, Singh D, Yadav RN (2014). Efficiency of SSR, ISSR and RAPD markers in molecular characterization of mungbean and other vigna species. Ind. J. Biotechnol. 13:81-88.

 
 

Tahir MS, Khan NUI, Sajid Ur R (2011). Development of an interspecific hybrid (Triploid) by crossing Gossypium hirsutum and G. arboreum. Cytologia 76:193-199.
Crossref

 
 

Tessier C, David J, This P, Boursiquot JM, Charrier A (1999). Optimisation of the choice of molecular markers for varietal identification in Vitis vinifera L. Theor. Appl. Genet. 98:171-177.
Crossref

 
 

Ulloa M, Brubaker C, Chee P (2007). Cotton. In: Kole C (ed) Genome mapping & molecular breeding. vol 6: technical crops. Springer, New York, pp.1-49.
Crossref

 
 

Vijayan K (2005). Inter simple sequence repeat (ISSR) polymorphism and its application in mulberry genome analysis. Int. J. Ind. Entomol. 10:79-86.

 
 

Wheeler TA, Gannaway JR, Keating K (1999). Identification of resistance to Thielaviopsis basicola in diploid cotton. Plant Dis. 83:831-833.
Crossref