African Journal of
Biotechnology

  • Abbreviation: Afr. J. Biotechnol.
  • Language: English
  • ISSN: 1684-5315
  • DOI: 10.5897/AJB
  • Start Year: 2002
  • Published Articles: 12271

Full Length Research Paper

Gene mining a marama bean expressed sequence tags (ESTs) database: Embryonic seed development genes and microsatellite marker identification

Emilia N. Sheehama
  • Emilia N. Sheehama
  • Department of Biological Sciences, University of Namibia, P. Bag 13301, Windhoek, Namibia.
  • Google Scholar
Percy M. Chimwamurombe*
  • Percy M. Chimwamurombe*
  • Department of Biological Sciences, University of Namibia, P. Bag 13301, Windhoek, Namibia.
  • Google Scholar


  •  Received: 14 October 2014
  •  Accepted: 30 September 2015
  •  Published: 07 October 2015

References

Bombarely A, Merchante C, Csukasi F, Cruz-Rus E, Caballero JL, Medina-Escobara N, Blanco-Portales R, Botella MA, Munoz-Blanco J, Sanchez-Sevilla JF, Valpuesta V (2010). Generation and analysis of ESTs from strawberry (Fragaria xananassa) fruits and evaluation of their utility in genetic and molecular studies. BMC Genomics 11(503):1-17.
Crossref
 
Cannon SB, May GD, Jackson SA (2009). Three sequenced legume genomes and many crop species: rich opportunities for translational genomics. Plant Physiol. 151: 970-977.
Crossref
 
Chingwaru W, Majinda TR, Yeboah SO, Jackson CJ, Kapewangolo PT, Kandawa-Schulz M, Cencic A (2011). Tylosema esculentum (Marama) tuber and bean extracts are strong antiviral agents against rotavirus infection. Evid. Based Complement. Alternat Med. Article ID 284795, 11 pages, 2011. doi:10.1155/2011/284795.
Crossref
 
Fei Z, Tang X, Alba RM, White JA, Ronning CM, Martin GB, Tanksley SD, Giovannoni JJ (2004). Comprehensive EST analysis of tomato and comparative genomics of fruit ripening. Plant J. 40:47-59.
Crossref
 
Frank E, Hall M, Trigg L, Holmes G, Witten IH (2004). Data mining in bioinformatics using Weka. Bioinformatics 20:2479-2481.
Crossref
 
Gonzalez-Ibeas D, Blanca J, Roig C, Gonzalez-To M, Pico B, Truniger V, Gomez P, Deleu W, Cano-Delgado A, Arus P, Nuez F, Garcia-Mas, J, Puigdomenech P, Aranda MA (2007). MELOGEN: an EST database for Melon functional genomics. BMC Genomics 8(306):1-17.
Crossref
 
Higgs PC, Attwood TK (2005). Bioinformatics and Molecular Evolution. UK & USA: Blackwell Science Ltd.
 
Kumar A, Bennetzen JL (1999). Plant Retrotransposons. Annu. Rev. Genet. 33:479-532.
Crossref
 
Matukumalli LK, Grefenstette JJ, Sonstergard TS, Van Tassell CP (2004). EST-PAGE- Managing and analyzing EST data. Bioinformatics 20(2):286-288.
Crossref
 
Müseler DL, Schönfeldt HC (2006). The Nutrient content of the Marama Bean (Tylosema esculentum), an underutilized legume from Southern Africa. Agricola 16:7-13.
 
Nagaraj SH, Gasser RB, Ranganathan S (2006). A Hitchhiker's guide to expressed sequence tag (EST) analysis. Brief. Bioinform. 8(1):6-21.
Crossref
 
Rhee SY, Dickerson J, Xu D (2006). Bioinformatics and its applications in Plant Biology. Annu. Rev. Plant Biol. 57:335-360.
Crossref
 
Singh VK, Singh AK, Chand R, Kushwaha C (2011). Role of bioinformatics in agriculture and sustainable development. Int. J. Bioinform. Res. 3(2):221-226.
Crossref
 
Takundwa M, Chimwamurombe PM, Kunert K, Cullis CA (2010). Isolation and characterisation of microsatellite repeats in marama bean (Tylosema esculentum). Afr. J. Agric. Res. 5(7):561-566.
 
Useche FJ, Gao G, Hanafey M, Rafalski A (2001). High-Throughput identification, database storage and analysis of SNPs in EST sequences. Genome Inform. 12:194-203.