African Journal of
Plant Science

  • Abbreviation: Afr. J. Plant Sci.
  • Language: English
  • ISSN: 1996-0824
  • DOI: 10.5897/AJPS
  • Start Year: 2007
  • Published Articles: 807

Full Length Research Paper

Genetic characterization of Cape gooseberry (Physalis peruviana L.) accessions in selected counties in Kenya using SSR markers

Pauline W. Muraguri
  • Pauline W. Muraguri
  • Department of Crops, Horticulture and Soils, Egerton University, P. O. Box 536-20115 Egerton, Kenya.
  • Google Scholar
Robert M. Gesimba
  • Robert M. Gesimba
  • Department of Crops, Horticulture and Soils, Egerton University, P. O. Box 536-20115 Egerton, Kenya.
  • Google Scholar
Joseph N. Wolukau
  • Joseph N. Wolukau
  • Department of Crops, Horticulture and Soils, Egerton University, P. O. Box 536-20115 Egerton, Kenya.
  • Google Scholar
Manfred Miheso
  • Manfred Miheso
  • Kenya Agricultural and Livestock Research Organization - Food Crops Research Institute, Njoro, Kenya.
  • Google Scholar


  •  Received: 12 October 2020
  •  Accepted: 04 December 2020
  •  Published: 31 January 2021

References

Ali A, Singh P (2016). Studies on production potential of cape gooseberry (Physalis peruviana L.) in sodic soil under varying agronomic manipulations. Journal of Applied and Natural Science 8(1):368-374.
Crossref

 

Bhandari R, Nishant Bhanu A, Srivastava K, Singh M, Shreya H (2017). Assessment of genetic diversity in crop plants. An overview. Advances in Plant and Agriculture Research 7:00255.
Crossref

 
 

Bonilla M, Piedrahíta E, Mauricio A, Terranova P, Amariles V, Eduardo J, Flórez M (2008). Molecular characterization of 43 accessions of cape gooseberry from six departments of Colombia. Acta Agronomica 57:109-115.

 
 

Campisano A, Pancher M, Puopolo G, Puddu A, Lòpez-Fernàndez S, Biagini B, Pertot I (2015). Diversity in endophyte populations reveals functional and taxonomic diversity between wild and domesticated grapevines. American Journal of Enology and Viticulture 66(1):12-21.
Crossref

 
 

Chacón S, Isabel M, Sánchez Y, Barrero M, Stella L (2016). Genetic structure of a Colombian cape gooseberry (Physalis peruviana L.) collection by means of microsatellite markers. Agronomía Colombiana 34(1):5-16.
Crossref

 
 

Demir K, Bakir M, Sarikamis G, Acunalp S (2010). Genetic diversity of eggplant (Solanum melongena) germplasm from Turkey assessed by SSR and RAPD markers. Genetics and Molecular Research 9(3):1568-1576.
Crossref

 
 

Ellis J, Burke M (2007). EST-SSRs as a resource for population genetic analyses. Heredity 99(2):125-132.
Crossref

 
 

Garzón-Martínez G, Osorio-Guarín J, Delgadillo-Durán P, Mayorga F, Enciso-Rodríguez F, Landsman D, Barrero L (2015). Genetic diversity and population structure in Physalis peruviana and related taxa based on InDels and SNPs derived from COSII and IRG markers. Plant Gene 4:29-37.
Crossref

 
 

Herrera M, Ortiz D, Fischer G, Chacón I (2011). Behavior in yield and quality of 54 cape gooseberry (Physalis peruviana L.) accessions from north-eastern Colombia. Agronomía Colombiana 29(2):189-196.

 
 

Kimura M, Crow F (1964). The number of alleles that can be maintained in a finite population. Genetics 49(4):725-738.
Crossref

 
 

Labate A, Robertson D, Wu F, Tanksley D, Baldo M (2009). EST, COSII, and arbitrary gene markers give similar estimates of nucleotide diversity in cultivated tomato (Solanum lycopersicum L.). Theoretical and Applied Genetics 118:1005-1014.
Crossref

 
 

Lagos T, Vallejo F, Criollo H, Muñoz J (2008). Sexual reproduction of the cape gooseberry. Acta Agronomica 57(2):81-87.

 
 

Leiva-Brondo M, Prohens J, Nuez F (2001). Genetic analyses indicate superiority of performance of cape gooseberry (Physalis peruviana L.) hybrids. Journal of New Seeds 3(3):71-84.
Crossref

 
 

Lewontin C (1972). The apportionment of human diversity. Evolutionary Biology 6:381-398.
Crossref

 
 

Liu K, Muse V (2005). Power Marker: an integrated analysis environment for genetic marker analysis. Bioinformatics 21:2128-2129.
Crossref

 
 

Mason A (2015). SSR Genotyping. In Plant Genotyping. Humana press, New York, USA. pp. 77-89.
Crossref

 
 

McDermott M, McDonald A (1993). Gene flow in plant pathosystems. Annual review of phytopathology 31(1):353-373.
Crossref

 
 

Morgante M, Hanafey M, Powell W (2002). Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nature genetics 30(2):194-200.
Crossref

 
 

Myers N, Mittermeier A, Mittermeier G, Da Fonseca A, Kent J (2000). Biodiversity hotspots for conservation priorities. Nature 403(6772):853-858.
Crossref

 
 

Nei M (1973). Analysis of gene diversity in subdivided populations. Proceedings of the National Academy of Sciences 70(12):3321-3323.
Crossref

 
 

Nei M (1978). Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89(3):583-590.

 
 

Ochatt S, Jain S (2007). Breeding of Neglected and Under-Utilized Crops, Spices, and Herbs. Science Publishers, Inc.: New Hampshire, NH, USA.
Crossref

 
 

Perrier X, Jacquemoud-Collet P (2006). DARwin software.

 
 

Porebski R, Bailey S, Baum R (1997). Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components. Plant Molecular Biology Reporter 15:8-15.
Crossref

 
 

Rao R, Hodgkin T (2002). Genetic diversity and conservation and utilization of plantgenetic resources. Plant Cell Tissue Organ Culture 68:1-19.

 
 

Rauf S, Teixeira da Silva J, Khan A, Naveed A (2010). Consequences of plant breeding on genetic diversity. International Journal of Plant Breeding 4:1-21.

 
 

Ravi B, Hrideek K, Kumar K, Prabhakaran R, Mal B, Padulosi S (2010). Mobilizing neglected and underutilized crops to strengthen food security and alleviate poverty in India. Indian Journal of Plant Genetic Resources 23(1):110-116.

 
 

Sim C, Van Deynze A, Stoffel K, Douches S, Zarka D, Ganal W, Chetelat T, Hutton F, Scott W, Gardner G, Panthee R, Mutschler M, Myers R, Francis M (2012). High-density SNP genotyping of tomato (Solanum lycopersicum L.) reveals patterns of genetic variation due to breeding. PLoS One 7(9):e45520.
Crossref

 
 

Simbaqueba J, Sanchez P, Sanchez E, Zarantes N, Chacon M, Barrero S, Mariño-Ramírez L (2011). Development and characterization of microsatellite markers for the Cape gooseberry Physalis peruviana. PloS one 6(10):e26719.
Crossref

 
 

Thies E (2000). Promising and underutilized species, crops and breeds. Available at: 

View

 
 

Villacorta M, Shaw J (2013). Peruvian Power Foods: 18 Superfoods, 101 Recipes, and Anti-aging Secrets from the Amazon to the Andes. Health Communications, Inc.

 
 

Virk S, Zhu J, Newbury J, Bryan J, Jackson T, Ford-Lloyd V (2000). Effectiveness of different classes of molecular marker for classifying and revealing variation in rice (Oryza sativa) germplasm. Euphytica 112(3):275-284.
Crossref

 
 

Wu J, Chang P, Lin L, Wang S, Hou F, Ng T (2009). Supercritical carbon dioxide extract of Physalis peruviana induced cell cycle arrest and apoptosis in human lung cancer H661 cells. Food and Chemical Toxicology 47(6):1132-1138.
Crossref

 
 

Yeh F, Yang R, Boyle T (2000). POPGENE Version 1.32: Software for Population Genetic Analysis.

 
 

Zhu C, Gore M, Buckler S, Yu J (2008). Status and prospects of association mapping in plants. Plant Genome 1:5-20.
Crossref