International Journal of
Biodiversity and Conservation

  • Abbreviation: Int. J. Biodivers. Conserv.
  • Language: English
  • ISSN: 2141-243X
  • DOI: 10.5897/IJBC
  • Start Year: 2009
  • Published Articles: 678

Full Length Research Paper

Highlighting the diversity of the rhizosphere mycobiome of five native West African trees

Kassim I. Tchan
  • Kassim I. Tchan
  • Research Unit in Tropical Mycology and Plant-Soil Fungi Interactions, Laboratory of Ecology, Botany and plant Biology, Faculty of agronomy, University of Parakou, BP 125 Parakou, Benin.
  • Google Scholar
Boris Armel Olou
  • Boris Armel Olou
  • Research Unit in Tropical Mycology and Plant-Soil Fungi Interactions, Laboratory of Ecology, Botany and plant Biology, Faculty of agronomy, University of Parakou, BP 125 Parakou, Benin.
  • Google Scholar
Gbètondji Basile Hounwanou
  • Gbètondji Basile Hounwanou
  • Research Unit in Tropical Mycology and Plant-Soil Fungi Interactions, Laboratory of Ecology, Botany and plant Biology, Faculty of agronomy, University of Parakou, BP 125 Parakou, Benin.
  • Google Scholar
Peter Meidl
  • Peter Meidl
  • Department of Ecology and Genetics, Evolutionary Biology, Uppsala University, Norbyvägen 18D, Uppsala, 752 36, Sweden.
  • Google Scholar
Apollon D. M.T. Hegbe
  • Apollon D. M.T. Hegbe
  • Research Unit in Tropical Mycology and Plant-Soil Fungi Interactions, Laboratory of Ecology, Botany and plant Biology, Faculty of agronomy, University of Parakou, BP 125 Parakou, Benin.
  • Google Scholar
Marie-Laure Guissou
  • Marie-Laure Guissou
  • Norbert Zongo University, Science and Technology Training and Research Unit. BP 376 Koudougou, Burkina Faso.
  • Google Scholar
Nourou S. Yorou
  • Nourou S. Yorou
  • Research Unit in Tropical Mycology and Plant-Soil Fungi Interactions, Laboratory of Ecology, Botany and plant Biology, Faculty of agronomy, University of Parakou, BP 125 Parakou, Benin.
  • Google Scholar


  •  Received: 27 October 2022
  •  Accepted: 01 February 2023
  •  Published: 31 March 2023

References

Abarenkov K, Somervuo P, Nilsson RH, Kirk PM, Huotari T, Abrego N, Ovaskainen O (2018). Protax-fungi: a web-based tool for probabilistic taxonomic placement of fungal internal transcribed spacer sequences. New Phytologist 220:517-525.
Crossref

 

Allen MF, Swenson W, Querejeta JI, Egerton-Warburton LM, Treseder KK (2003). Ecology of Mycorrhizae:A Conceptual Framework for Complex Interactions among Plants and Fungi. Annual Review of Phytopathology 41:271-303.
Crossref

 

Bâ AM, Duponnois R, Moyersoen B, Diédhiou AG (2012). Ectomycorrhizal symbiosis of tropical African trees. Mycorrhiza 22:1-29.
Crossref

 

Balima LH, Nacoulma BMI, Ekué MRM, Kouamé FNG, Thiombiano A (2018). Use patterns, use values and management of Afzelia africana Sm. in Burkina Faso:Implications for species domestication and sustainable conservation. Journal of Ethnobiology and Ethnomedicine 14:1-14.
Crossref

 

Bhat BA, Sheikh MA, Tiwari A (2014). Impact of various edaphic factors on AMF spore population and diversity in Catharanthus roseus at Gwalior. International Journal of Plant Sciences 9:1-6.

 

Brundrett MC, Tedersoo L (2018). Evolutionary history of mycorrhizal symbioses and global host plant diversity. New Phytologist 220:1108-1115.
Crossref

 

Burke DJ, López-Gutiérrez JC, Smemo KA, Chan CR (2009). Vegetation and soil environment influence the spatial distribution of root-associated fungi in a mature beech-maple forest. Applied and Environmental Microbiology 75:7639-7648.
Crossref

 

Corrales A, Henkel TW, Smith ME (2018). Ectomycorrhizal associations in the tropics - biogeography, diversity patterns and ecosystem roles. New Phytologist 220:1076-1091.
Crossref

 

Crous PW, Rong IH, Wood A, Lee S, Glen H, Botha W, Slippers B, De Beer WZ, Wingfield MJ, Hawksworth DL (2006). How many species of fungi are there at the tip of Africa? Studies in Mycology 55:13-33.
Crossref

 

Diédhiou AG, Selosse MA, Galiana A, Diabaté M, Dreyfus B, Bâ AM, de Faria SM, Béna G (2010). Multi-host ectomycorrhizal fungi are predominant in a Guinean tropical rainforest and shared between canopy trees and seedlings. Environmental Microbiology 12:2219-2232.
Crossref

 

Djotan AKG, Matsushita N, Vaario LM, Yorou NS, Fukuda K (2021). Arbuscular mycorrhizas in the roots of afzelia africana, Entada Africana, and Pterocarpus Erinaceus. Applied Ecology and Environmental Research 19:833-848.
Crossref

 

Dlamini SP, Akanmu AO, Babalola OO (2022). Rhizospheric microorganisms: The gateway to a sustainable plant health. Frontiers in Sustainable Food Systems 6.
Crossref

 

Ebenye MHC, Taudière A, Niang N, Ndiaye C, Sauve M, Awana NO, Verbeken M, De Kesel A, Séne S, Diédhiou AG, Sarda V, Sadio O, Cissoko M, Ndoye I, Selosse MA, Bâ AM (2017). Ectomycorrhizal fungi are shared between seedlings and adults in a monodominant Gilbertiodendron dewevrei rain forest in Cameroon. Biotropica 49:256-267.
Crossref

 

Egger KN (1986). Substrate hydrolysis patterns of post-fire Ascomycetes (Pezizales). Mycological Society of America 78:771-780.
Crossref

 

Fonton NH, Atindogbe G, Fandohan B, Lejeune P, Ligot G (2012). Structure spatiale des arbres des savanes boisées et forêts claires soudaniennes:Implication pour les enrichissements forestiers. Biotechnology, Agronomy and Society and Environment 16:429-440.

 

Gebhardt S, Neubert K, Wöllecke J, Münzenberger B, Hüttl RF (2007). Ectomycorrhiza communities of red oak (Quercus rubra L.) of different age in the Lusatian lignite mining district, East Germany. Mycorrhiza 17:279-290.
Crossref

 

Giollant M, Guillot J, Damez M, Dusser M, Didier P, Didier É (1993). Characterization of a lectin from Lactarius deterrimus. Plant Physiology 101:513-522.
Crossref

 

Gorzelak MA, Asay AK, Pickles BJ, Simard SW (2015). Inter-plant communication through mycorrhizal networks mediates complex adaptive behaviour in plant communities. AoB Plants 7:plv050.
Crossref

 

Grzyb A, Wolna-Maruwka A, Niewiadomska A (2021). The significance of microbial transformation of nitrogen compounds in the light of integrated crop management. Agronomy 11 p.
Crossref

 

Henry C, Selosse M-A, Richard F, Ramanankierana H, Ducousso M (2021). Comprendre la dynamique des communautés mycorhiziennes lors des successions végétales. Deuxième partie?:Potentialités d ' applications à la restauration des écosystèmes forestiers (revue bibliographique ) To cite this version?:HAL Id?:hal-03447480 Co. Hal open science:125-150.

 

Houdanon R, Tchan I, Laourou G, Codjia J, Badou S, Aignon L, Boni S, Yorou N (2019). Spatial Structure Of Ectomycorrhizal Trees In Wooded Savannas Of Guineo-Sudanian Ecozone In West Africa. Tropical forest science 31:1-11.
Crossref

 

Houngnandan P, Yemadje R, Kane A, Boeckx P, Van Cleemput O (2009). Les glomales indigènes de la forêt claire à Isoberlinia doka (Craib et Stapf) à Wari-Maro au centre du Bénin. Tropicultura 27:83-87.

 

Ishida TA, Nara K, Hogetsu T (2007). Host effects on ectomycorrhizal fungal communities:Insight from eight host species in mixed conifer-broadleaf forests. New Phytologist 174:430-440.
Crossref

 

Islam M, Al-Hashimi A, Ayshasiddeka M, Ali H, El Enshasy HA, Dailin DJ, Sayyed RZ, Yeasmin T (2022). Prevalence of mycorrhizae in host plants and rhizosphere soil:A biodiversity aspect. PLoS ONE 17:1-14.
Crossref

 

Johnson D, Vandenkoornhuyse P, Leake JR, Gilbert L, Booth RE, Grime JP, Young JPW, Read DJ, Booth E, Leakel R, Gilbert L, Johnsonl D, Vandenkoornhuyse PJ, Young W, Read DJ, Peter J, Grime JP (2004). Plant communities affect arbuscular mycorrhizal fungal diversity and community composition in grassland microcosm. New Phytologist 161:503-515.
Crossref

 

Kõljalg U, Abarenkov K, Zirk A, Runnel V, Piirmann T, Pöhönen R, Ivanov F (2019). PlutoF:Biodiversity data management platform for the complete data lifecycle. Biodiversity Information Science and Standards 3:1-5.
Crossref

 

Kretzer A, Li Y, Szaro T, Bruns TD (1996). Internal transcribed spacer sequences from 38 recognized species of Suillus sensu lato: Phylogenetic and taxonomic implications. Mycologia 88:776-785.
Crossref

 

Kubartová A, Ottosson E, Dahlberg A, Stenlid J (2012). Patterns of fungal communities among and within decaying logs, revealed by 454 sequencing. Molecular Ecology 21(18):4514-4532.
Crossref

 

Lance AC, Burke DJ, Hausman CE, Burns JH (2020). High-throughput sequencing provides insight into manipulated soil fungal community structure and diversity during temperate forest restoration. Restoration Ecology 28:S365-S372.
Crossref

 

Larekeng SH, Gusmiaty, Restu M, Tunggal A, Susilowati A (2019). Isolation and identification of rhizospheric fungus under Mahoni (Swietenia mahagoni) stands and its ability to produce IAA (Indole Acetid Acid) hormones. IOP Conference Series: Earth and Environmental Science 343.
Crossref

 

LeDuc SD, Lilleskov EA, Horton TR, Rothstein DE (2013). Ectomycorrhizal fungal succession coincides with shifts in organic nitrogen availability and canopy closure in post-wildfire jack pine forests. Oecologia 172:257-269.
Crossref

 

Lu T, Ke M, Lavoie M, Jin Y, Fan X, Zhang Z, Fu Z, Sun L, Gillings M, Peñuelas J, Qian H, Zhu YG (2018). Rhizosphere microorganisms can influence the timing of plant flowering. Microbiome 6:1-12.
Crossref

 

Luo Y, Wang Z, He Y, Li G, Lv X, Zhuang L (2020). High-throughput sequencing analysis of the rhizosphere arbuscular mycorrhizal fungi (AMF) community composition associated with Ferula sinkiangensis. BMC Microbiology 20:1-14.
Crossref

 

Marschner P, Crowley D, Yang CH (2004). Development of specific rhizosphere bacterial communities in relation to plant species, nutrition and soil type. Plant and Soil 261:199-208.
Crossref

 

Massicotte HB, Molina R, Luoma DL, Smith JE (1994). Biology of the ectomycorrhizal genus, Rhizopogon II. Patterns of host?fungus specificity following spore inoculation of diverse hosts grown in monoculture and dual culture. New Phytologist 126:677-690.
Crossref

 

McGuire KL (2007). Common ectomycorrhizal networks may maintain monodominance in a tropical rain forest. Ecology 88(3):567-574.
Crossref

 

Meidl P, Furneaux B, Tchan KI, Kluting K, Ryberg M, Guissou ML, Soro B, Traoré A, Konomou G, Yorou NS, Rosling A (2021). Soil fungal communities of ectomycorrhizal dominated woodlands across West Africa. MycoKeys 81:45-68.
Crossref

 

Mohammed EMI, Elhag AMH, Ndakidemi PA, Treydte AC (2021). Anthropogenic pressure on tree species diversity, composition, and growth of balanites aegyptiaca in dinder biosphere reserve, Sudan. Plants 10:1-18.
Crossref

 

Molina R, Trappe J (1994). Biology of the ectomycorrhizal genus, Rhizopogon I. Host associations, host?specificity and pure culture syntheses. New Phytologist 126:653-675.
Crossref

 

Nihorimbere V, Ongena M, Smargiassi M, Thonart P (2011). Effet bénéfique de la communauté microbienne de la rhizosphère sur la croissance et la santé des plantes. Biotechnology, Agronomy and Society and Environment 15:327-337.

 

Nilsson RH, Wurzbacher C, Bahram M, Coimbra VRM, Larsson E, Tedersoo L, Eriksson J, Ritter CD, Svantesson S, Sánchez-García M, Ryberg M, Kristiansson E, Abarenkov K (2016). Top 50 most wanted fungi. MycoKeys 12:29-40.
Crossref

 

Nilsson RH, Anslan S, Bahram M, Wurzbacher C, Baldrian P, Tedersoo L (2019). Mycobiome diversity:high-throughput sequencing and identification of fungi. Nature Reviews Microbiology 17:95-109.
Crossref

 

Ogbimi ER, Sakpere AMA (2021). Germination and seedling growth in Afzelia africana Sm. ex. Pers. Ife Journal of Science 23:41-50.
Crossref

 

Ogbimi ER, Sakpere AM, Akinropo SM (2020). Vegetative propagation of Afzelia africana Sm. Ex Pers.:a multipurpose and threatened tree. International Journal of Biological and Chemical Sciences 14:204-212.
Crossref

 

Oksanen J, Simpson GL, Blanchet FG, Solymos P, Stevens MHH, Szoecs E, Wagner H, Barbour M, Bedward M, Bolker B, Borcard D, Carvalho G, Chirico M, Durand S, Beatriz H, Evangelista A, Friendly M, Hannigan G, Hill MO, Lahti L, Mcglinn D, Ribeiro E, Smith T, Stier A, Ter CJF (2022). Community Ecology Package. version 2.9 (2013):1-295.

 

Olahan G, Sule I, Garuba T, Salawu Y (2016). Rhizosphere and Non-Rhizosphere Soil Mycoflora of Corchorus Olitorius (Jute). Science World Journal 11(3):23-26.

 

Pattnaik SS, Busi S (2019). Rhizospheric Fungi:Diversity and Potential Biotechnological Applications. In:Yadav A, Mishra S, Singh S, Gupta A (eds) Recent Advancement in White Biotechnology Through Fungi. Fungal Biology 73-100.
Crossref

 

Qin Y (2018). 2 University of Oklahoma Studying microbial community diversities using high-throughput techniques and computational tools. Available from: https://shareok.org/bitstream/handle/11244/316306/2018_Qin_Yujia_Dissertation.pdf?sequence=2&isAllowed=y

 

Rashid MI, Mujawar LH, Shahzad T, Almeelbi T, Ismail IMI, Oves M (2016). Bacteria and fungi can contribute to nutrients bioavailability and aggregate formation in degraded soils. Microbiological Research 183:26-41.
Crossref

 

Rodríguez-Morelos VH, Soto-Estrada A, Pérez-Moreno J, Franco-Ramírez A, Díaz-Rivera P (2014). Arbuscular mycorrhizal fungi associated with the rhizosphere of seedlings and mature trees of Swietenia macrophylla (Magnoliophyta : Meliaceae) in Los Tuxtlas, Veracruz, Mexico. Revista Chilena de Historia Natural 87:1-10.
Crossref

 

Rosas-Medina M, Maciá-Vicente JG, Piepenbring M (2020). Diversity of Fungi in Soils with Different Degrees of Degradation in Germany and Panama. Mycobiology 48:20-28.
Crossref

 

Sathya A, Vijayabharathi R, Gopalakrishnan S (2016). Microbial inoculants in sustainable agricultural productivity: Vol. 2: Functional applications. Microbial Inoculants in Sustainable Agricultural Productivity: Volume 2: Functional Applications:1-308.
Crossref

 

Senanayake I, Rathnayaka A, Marasinghe D, Calabon M, Gentekaki E, Lee H, Hurdeal V, Pem D, Dissanayake L, Wijesinghe S, Bundhun D, Goonasekara I, Abeywickrama P, Bhunjun C, Jayawardena R, Wanasinghe DN, Jeewon R, Bhat DJ, Xiang M (2020). Morphological approaches in studying fungi:collection, examination, isolation, sporulation and preservation. Mycosphere 11:2678-2754.
Crossref

 

Shirouzu T, Uno K, Hosaka K, Hosoya T (2016). Early-diverging wood-decaying fungi detected using three complementary sampling methods. Molecular Phylogenetics and Evolution 98:11-20.
Crossref

 

Smith SE, Read DJ (2008). Mycorrhizal Symbiosis. Third. Academic Press, Cambridge.

 

Somervuo P, Koskela S, Pennanen J, Henrik Nilsson R, Ovaskainen O (2016). Unbiased probabilistic taxonomic classification for DNA barcoding. Bioinformatics 32:2920-2927.
Crossref

 

Sterkenburg E, Bahr A, Brandström Durling M, Clemmensen KE, Lindahl BD (2015). Changes in fungal communities along a boreal forest soil fertility gradient. New Phytologist 207:1145-1158.
Crossref

 

Stokland JN, Siitonen J, Jonsson BG (2012). Biodiversity in Dead Wood. Cambridge University Press, Cambridge.
Crossref

 

Straatsma G, Ayer F, Egli S (2001). Species richness, abundance, and phenology of fungal fruit bodies over 21 years in a Swiss forest plot. Mycological Research 105:515-523.
Crossref

 

Taylor DL, Bruns TD (1997). Independent, specialized invasions of ectomycorrhizal mutualism by two nonphotosynthetic orchids. Proceedings of the National Academy of Sciences USA 94:4510-4515.
Crossref

 

Taylor DL, Bruns TD, Leake JR, Read DJ (2002). Mycorrhizal Specificity and Function in Myco-heterotrophic Plants. Mycorrhizal Ecology 157:375-413.
Crossref

 

Tedersoo L, Smith ME (2013). Lineages of ectomycorrhizal fungi revisited: Foraging strategies and novel lineages revealed by sequences from belowground. Fungal Biology Reviews 27:83-99.
Crossref

 

Tedersoo L, Smith ME (2017). Ectomycorrhizal Fungal Lineages:Detection of Four New Groups and Notes on Consistent Recognition of Ectomycorrhizal Taxa in High-Throughput Sequencing Studies. In: Tedersoo, L. (eds) Biogeography of Mycorrhizal Symbiosis. Ecological Studies 230:125-142.
Crossref

 

Tedersoo L, Anslan S, Bahram M, Drenkhan R, Pritsch K, Buegger F, Padari A, Hagh-Doust N, Mikryukov V, Gohar D, Amiri R, Hiiesalu I, Lutter R, Rosenvald R, Rähn E, Adamson K, Drenkhan T, Tullus H, Jürimaa K, Sibul I, Otsing E, Põlme S, Metslaid M, Loit K, Agan A, Puusepp R, Varik I, Kõljalg U, Abarenkov K (2020). Regional-Scale In-Depth Analysis of Soil Fungal Diversity Reveals Strong pH and Plant Species Effects in Northern Europe. Frontiers in Microbiology 11:1-31.
Crossref

 

Tedersoo L, Bahram M, Polme S, Koljalg U, Yorou NS, Wijesundera R, Ruiz L V., Vasco-Palacios AM, Thu PQ, Suija A, Smith ME, Sharp C, Saluveer E, Saitta A, Rosas M, Riit T, Ratkowsky D, Pritsch K, Poldmaa K, Piepenbring M, Phosri C, Peterson M, Parts K, Partel K, Otsing E, Nouhra E, Njouonkou AL, Nilsson RH, Morgado LN, Mayor J, May TW, Majuakim L, Lodge DJ, Lee SS, Larsson K-H, Kohout P, Hosaka K, Hiiesalu I, Henkel TW, Harend H, Guo L -d., Greslebin A, Grelet G, Geml J, Gates G, Dunstan W, Dunk C, Drenkhan R, Dearnaley J, De Kesel A, Dang T, Chen X, Buegger F, Brearley FQ, Bonito G, Anslan S, Abell S, Abarenkov K (2014). Global diversity and geography of soil fungi. Science 346:1256688-1256688.
Crossref

 

Tedersoo L, Jairus T, Horton BM, Abarenkov K, Suvi T, Saar I, Kõljalg U (2008). Strong host preference of ectomycorrhizal fungi in a Tasmanian wet sclerophyll forest as revealed by DNA barcoding and taxon-specific primers. New Phytologist 180:479-490.
Crossref

 

Thind S, Chaudhary MS, Ditta A, Hussain I, Parveen A, Ullah N, Mahmood Q, Al-ashkar I, El-Sabagh A (2022). Impact of Mycorrhizal Fungi from Different Rhizospheric Soils on Fungal Colonization, Growth, and Chlorophyll Contents of Cenchrus ciliaris. Agronomy 12:2644.
Crossref

 

Toju H, Sato H, Yamamoto S, Kadowaki K, Tanabe AS, Yazawa S, Nishimura O, Agata K (2013). How are plant and fungal communities linked to each other in belowground ecosystems? A massively parallel pyrosequencing analysis of the association specificity of root-associated fungi and their host plants. Ecology and Evolution 3:3112-3124.
Crossref

 

Tremblay ÉD, Kimoto T, Bérubé JA, Bilodeau GJ (2019). High-Throughput sequencing to investigate phytopathogenic fungal propagules caught in baited insect traps. Journal of Fungi 5:1-19.
Crossref

 

Vogelsang KM, Bever JD, Griswold M, Schultz P a (2004). Caltrans Contract The Use of Mycorrhizal Fungi in Erosion Control Applications.

 

van der Wal A, Bloem J, Mulder C, de Boer W (2009). Relative abundance and activity of melanized hyphae in different soil ecosystems. Soil Biology and Biochemistry 41:417-419.
Crossref

 

Wickham H (2016). ggplot2:Elegant Graphics for Data Analysis. Springer-Verlag New York, Cham. Crossref

 

Wu D, Zhang M, Peng M, Sui X, Li W, Sun G (2019). Variations in soil functional fungal community structure associated with pure and mixed plantations in typical temperate forests of China. Frontiers in Microbiology 10:1-12.
Crossref

 

Xavier MWF, Rodrigues BF (2020). Identification of Dominant Arbuscular Mycorrhizal Fungi in Different Rice Ecosystems. Agricultural Research 9:46-55.
Crossref

 

Zhang T, Wang NF, Liu HY, Zhang YQ, Yu LY (2016). Soil pH is a key determinant of soil fungal community composition in the Ny-Ålesund Region, Svalbard (High Arctic). Frontiers in Microbiology 7:1-10.
Crossref

 

Zhu S, Wang Y, Xu X, Liu T, Wu D, Zheng X, Tang S, Dai Q (2018). Potential use of high-throughput sequencing of soil microbial communities for estimating the adverse effects of continuous cropping on ramie (Boehmeria nivea L. Gaud). PLoS ONE 13:1-16.
Crossref