Journal of
Plant Breeding and Crop Science

  • Abbreviation: J. Plant Breed. Crop Sci.
  • Language: English
  • ISSN: 2006-9758
  • DOI: 10.5897/JPBCS
  • Start Year: 2009
  • Published Articles: 447

Full Length Research Paper

Microsatellites revealed genetic diversity and population structure in Colombian avocado (Persea americana Mill.) germplasm collection and its natural populations

Gloria Patricia Canas-Gutierrez
  • Gloria Patricia Canas-Gutierrez
  • Laboratorio de Control Biológico y Fitosanidad, Corporación para investigaciones Biológicas, Medellín, Antioquia, Colombia.
  • Google Scholar
Rafael Eduardo Arango-Isaza
  • Rafael Eduardo Arango-Isaza
  • Escuela de Biociencias, Facultad de Ciencias, Universidad Nacional de Colombia, sede Medellín, Antioquía, Colombia.
  • Google Scholar
Clara Inés Saldamando-Benjumea
  • Clara Inés Saldamando-Benjumea
  • Escuela de Biociencias, Facultad de Ciencias, Universidad Nacional de Colombia, sede Medellín, Antioquía, Colombia.
  • Google Scholar


  •  Received: 28 November 2018
  •  Accepted: 20 February 2019
  •  Published: 30 April 2019

References

Alcaraz ML, Hormaza JI (2007). Molecular Characterization and genetic diversity in an avocado collection of cultivars and local Spanish genotypes using SSRs. Hereditas 144:244-253.
Crossref

 

Ashworth VE, Clegg MT (2003). Microsatellite markers in avocado (Persea americana Mill.): genealogical relationships among cultivated avocado genotypes. Journal of Heredity 94:407-415.
Crossref

 

Barrientos-Priego A, López-López L (2007). Historia y genética del aguacate. In: Memoria de la Fundación Salvador Sánchez Colin. Centro de Investigaciones Científicas y Tecnológicas del aguacate en el estado de México. Coatepec de Harinas, México 1:100-121.

 

Borrone JW, Schnell RJ, Violi HA, Ploetz RC (2007). Seventy microsatellite markers from Persea americana Miller (avocado) expressed sequence tags. Molecular Ecology Notes 7:439-444.
Crossref

 

Bergh B (1992). The origin, nature and genetic improvement of the avocado. In: California Avocado society yearbook 76:61-75.

 

Bernal J, Díaz-Diez C, Osorio-Toro C, Tamayo-Vélez A, Osorio-Vega W, Córdoba-Gaona O, Londo-o-Zuluaga ME, Kondo-Rodríguez D, Tamasasuka D, Carabalí-Mu-oz A,Varón- Devia E, Caicedo-Vallejo AM, Tamayo-Molano PJ, Sandoval-Aldana A, Forero-Longas F, García-Lozano J, Londo-o-Bonilla M (2014). Actualización Tecnológica y Buenas Prácticas Agrícolas (BPA) en el Cultivo de Aguacate. 410 p. Ed. Corpoica. SUIMAGEN CREATIVA S.A.S. Colombia. 

View

 

Ca-as-Gutiérrez GP, Galindo-López LF, Arango- Isaza RE, Saldamando-Benjumea CI (2015). Diversidad genética de aguacate (Persea americana) en Antioquia. Colombia. Agronomía Mesoamericana 226:129-143.

 

Corona-Jácome EC, Galindo-Tovar ME, Lee-Espinosa HE, Landero-Torres I (2016). Diversidad genética del aguacate (Persea americana Mill.) en cuatro zonas de su área de dispersión natural. Agroproductividad 9:80-85.

 

Chanderbali AS, Albert VA, Ashworth VTEM, Clegg MT, Litz RE, Soltis DE, Soltis PS (2008). Persea americana (avocado): bringing ancient flowers to fruit in the genomics era. Bioassays 30:386-396.
Crossref

 

Chen H, Morrell PL, Ashworth VE, De la Cruz M, Clegg MT (2009). Tracing the geographic origins of major avocado cultivars. Journal of Heredity 100:56-65.
Crossref

 

Earl DA, vonHoldt BM (2012). Structure Harvester: a website and program for visualizing structure output and implementing the Evanno method. Conservation Genetics Resources 4:359-361.
Crossref

 

Evanno G, Regnaut S, Goudet, J (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Molecular Ecology 14(8):2611-2620.
Crossref

 

Frankel OH, Brown AHD, Burdon JJ (1995). The conservation of plant biodiversity. Cambridge Univ. Press, Cambridge.

 

Freeland J (2005). Molecular Ecology. Ed. John Wiley and Sons. West Sussex. England.

 

Gross-German E, Viruel MA (2013). Molecular characterization of avocado germplasm with a new set of SSR and EST-SSR markers: genetic diversity population structure and identification of race-specific markers in a group of cultivated genotypes. Tree Genetics and Genomes 9:539-555.
Crossref

 

Guzmán LF, Machida-Hirano R, Borrayo E, Cortés-Cruz M; Espíndola-Barquera MC, Heredia-García E (2017). Genetic structure and selection of a core collection for long term conservation of avocado in Mexico. Frontiers on Plant Science 8:243.
Crossref

 

International Plant Genetic Resources Institute (IPGRI) (1995) Descriptors for Avocado (Persea spp.). International Plant Genetic Resources Institute, Rome, Italy 106 p.

 

Karp A, Edwards K, Bruford M, Vosman B, Morgante M, Seberg O, Kremer A, Boursot P, Arctander P, Tautz D, Hewitt G (1997). Newer molecular technologies for biodiversity evaluation: Opportunities and challenges. Nature Biotechnology 15:625-628.
Crossref

 

Kumar S, Dudley J, Nei M, Tamura K (2008). MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief in Bioinformatics 9:299-306.
Crossref

 

Odong TL, van Heerwaarden J, Jansen J, van Hintum TJL, van Eeuwijk FA (2011). Determination of genetic structure of genebank collections: are traditional hierarchical clustering methods appropriate for molecular marker data? Theoretical Applied Genetics 123:195-205.
Crossref

 

Peakall R, Smouse PE (2012). GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update. Bioinformatics 28:2537-2539.
Crossref

 

Pritchard JK, Stephens M, Donnelly P (2000). Inference of population structure using multilocus genotype data. Genetics 155:945-959.

 

Raymond M, Rousset F (1995). GENEPOP, version 1.2: population genetics software for exact tests and ecumenicism. Journal of Heredity 86:248-249.
Crossref

 

Rodríguez M, Jaramillo G, Orozco J (2009). Colecta de Aguacates criollos colombianos como base para iniciar programas de fitomejoramiento que contribuyan a su competitividad. In: Memorias III Congreso latinoamericano de Aguacate. Nov 11-13.

 

Sánchez-Pérez J (1999). Recursos genéticos de aguacate (Persea americana Mill.) y especies afines en México. Revista Chapingo Serie Horticultura 5:7-18.

 

Schnell RJ, Brown JS, Olano CT, Power EJ, Krol CA, Kuhn DN, Motamayor JC (2003). Evaluation of avocado genebank using microsatellite markers. Journal of the American Society Horticultural Science 128:881-889.
Crossref

 

Sharon D, Cregan PB, Mhameed S, Kusharska M, Hillel J, Lahav E, Lavi U (1997). An integrated genetic linkage map of avocado. Theoretical Applied Genetics 95:911 -921.
Crossref

 

Sokal RR, Rohlf FJ (1995). Biometry: the principles and practice of statistics in biological research. WH Freeman, New York