African Journal of
Biotechnology

  • Abbreviation: Afr. J. Biotechnol.
  • Language: English
  • ISSN: 1684-5315
  • DOI: 10.5897/AJB
  • Start Year: 2002
  • Published Articles: 12487

Full Length Research Paper

Two electrophoreses in different pH buffers to purify forest soil DNA contaminated with humic substances

Weiguo Hou1,2, Bin Lian1* and Sarah Rothenberg1
1Key State Laboratory of Environmental Geochemistry, Institute of Geochemistry, Chinese Academy of Sciences, Guiyang, People’s Republic of China. 2Graduate University of Chinese Academy of Sciences, Beijing, People’s Republic of China.
Email: [email protected]

  •  Accepted: 08 February 2010
  •  Published: 30 April 2010

Abstract

Direct extraction of DNA from soils is a useful way to gain genetic information on the soil source. However, DNA extraction from soils, especially forest soils, may be contaminated by humic substances due to their similar physical and chemical characteristics to soil. Even commercial soil DNA extraction kits fail to retrieve DNA from these soils. Using the potential changes of specific charge of DNA and humic substances in a pH solution, we performed two electrophoreses in different pH buffers to eliminate the interfering substances. The method produced high quality soil DNA, which is applicable for PCR amplification.

 

Key words: DNA extraction, forest soil, humic substances, pH, specific charge, two-step electrophoreses.