African Journal of
Biotechnology

  • Abbreviation: Afr. J. Biotechnol.
  • Language: English
  • ISSN: 1684-5315
  • DOI: 10.5897/AJB
  • Start Year: 2002
  • Published Articles: 12487

Full Length Research Paper

Genetic diversity and population structure of Ethiopian finger millet (Eleusine coracana (L.) Gaertn) genotypes using inter simple sequence repeat (ISSR) markers

Haftom Brhane
  • Haftom Brhane
  • Biology Department, Haramaya University, Ethiopia.
  • Google Scholar
Teklehaimanot Haileselassie
  • Teklehaimanot Haileselassie
  • Institite of Biotechnology, AAU, Addis Ababa, Ethiopia.
  • Google Scholar
Kassahun Tesfaye
  • Kassahun Tesfaye
  • Institite of Biotechnology, AAU, Addis Ababa, Ethiopia.
  • Google Scholar


  •  Received: 08 February 2016
  •  Accepted: 21 March 2017
  •  Published: 24 May 2017

References

Arya L, Verma M, Gupta VK, Seetharam A (2013). Use of genomic and genic SSR markers for assessing genetic diversity and population structure in Indian and African finger millet (Eleusine coracana (L.) Gaertn.) germplasm. Plant Syst. Evol. 299:1395-1401.
Crossref

 

Babu BK, Agrawal PK, Pandey D, Kumar A (2014). Comparative genomics and association mapping approaches for opaque2 modifier genes in finger millet accessions using genic, genomic and candidate gene-based simple sequence repeat markers. Mol. Breed. 34:1261-1279.
Crossref

 
 

Babu BK, Senthil N, Gomez SM, Biji KR, Rajendraprasad NS, Kumar SS, Babu RC (2007). Assessment of genetic diversity among finger millet (Eleusine coracana (L.) Gaertn.) accessions using molecular markers. Genet. Resour. Crop Evol. 54:399-404.
Crossref

 
 

Bezaweletaw K (2011). Genetic diversity of finger millet [Eleusine coracana. (L) Gaertn] landraces characterized by Random Amploified Polymophic DNA Analysis. Innov. Syst. Des. Eng. 2:2222-2871.

 
 

Bisht M, Mukai Y (2001). Genomic in situ hybridization identifies genome donor of finger millet (Eleusine coracana). Theor. Appl. Genet. 102:825-832.
Crossref

 
 

Borsch T, Hilu KW, Quandt D, Wilde V, Neinhuis C, Barthlott W (2003). Noncoding plastid trnT-trnF sequences reveal a well resolved phylogeny of basal angiosperms. J. Evol. Biol. 16:558-576.
Crossref

 
 

Dida MM, Srinivasachary RS, Bennetzen JL, Gale MD, Devos KM (2007). The genetic map of finger millet, Eleusine coracana. Theor. Appl. Genet. 114:321-332.
Crossref

 
 

Dida MM, Wanyera N, Dunn MLH, Bennetzen JL, Devos KM (2008). Population structure and diversity in finger millet. (Eleusine coracana) germplasm. Trop. Plant Biol. 1:131-141.
Crossref

 
 

Excoffier L, Laval G, Schneider S (2006). An Integrated Software Package for Population Genetics Data Analysis. Computational and Molecular Population Genetics Lab (CMPG), Institute of Zoology, University of Berne, Switzerland.

 
 

Fakrudin B, Kulkarni RS, Shashidhar HE, Hittalmani S (2004). Genetic diversity assessment of finger millet, Eleusine coracana (Gaertn), germplasm through RAPD analysis. Plant Gen. Res. Newsl. 138:50-54.

 
 

Gichuki S, Berenyi M, Zhang D, Hermann M, Schmidt J, Glo¨ssl J, Burg K (2003). Genetic diversity in sweetpotato [Ipomoea batatas (L.) Lam.] in relationship to geographic sources as assessed with RAPD markers. Genet. Resour. Crop Evol. 50:429-437.
Crossref

 
 

Gupta R, Verma K, Joshi DC, Yadav D, Singh M (2010). Assessment of genetic relatedness among three varieties of finger millet with variable seed coat color using RAPD and ISSR markers. Genet. Eng. Biotechnol. J. 2:1-9.

 
 

Hilu KW (1995). Evolution of finger millet: evidence from random amplified polymorphic DNA. Genome 38:232-238.
Crossref

 
 

Jaccard P (1908). Nouvelles rescherches Sur la distribution florale. Bull. Soc. Vaud. Sci. Nat. 44:223-270.

 
 

Karad S, Patil JV, Kale AA (2013). Study of genetic diversity in finger millet (Elesuine coracana L.) genotypes using RAPD markers. Int. J. Integr. Sci. Innov. Technol. Sec A 2(4):31-36.

 
 

Kotschi J (2006). Coping with Climate Change, and the Role of Agrobiodiversity. Conference on International Agricultural Research for Development. Tropentag 2006 University of Bonn. October 11-13, 2006.

 
 

Nirgude M, Babu BK, Shambhavi Y, Singh UM, Upadhyaya HD, Kumar A (2014). Development and molecular characterization of genic molecular markers for grain protein and calcium content in finger millet (Eleusine coracana (L.) Gaertn.). Mol. Biol. Rep. 41:1189-1200.
Crossref

 
 

Panwar P, Saini RK, Sharma N, Yadav D, Kumar A (2010). Efficiency of RAPD, SSR and cytochrome P450 gene based markers in accessing genetic variability amongst finger millet (Eleusine coracana) accessions. Mol. Biol. Rep. 37:4075-4082.
Crossref

 
 

Pavlicek A, Hrda S, Flegr J (1999). Free-tree-soft ware program for construction of phylogenetic trees on the basis of distance data and bootstrap/jackknife analysis of the tree robustness. Application in the RAPD analysis of genus Frenkelia. Folia Biol. (Praha). 45:97-99.

 
 

Ramakrishnan M, Ceasar SA, Duraipandiyan V, Al-Dhabi NA, Ignacimuthu S (2016). Using molecular markers to assess the genetic diversity and population structure of finger millet (Eleusine coracana (L.) Gaertn.) from various geographical regions. Genet. Resour. Crop Evol. 63(2):361-376.
Crossref

 
 

Rohlf FJ (2000). NTSYS-pc ver 2.11T. Exter Software, Setauket, New York.

 
 

Saitou N, Nei M (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.

 
 

Salimath SS, de Oliveira AC, Godwin ID, Bennetzen JL (1995). Assessment of genome origins and genetic diversity in the genus Eleusine with DNA markers. Genome 38:757-763.
Crossref

 
 

Sneath P, Sokal R (1973). Numerical taxonomy. Freeman, San Francisco.

 
 

Statistica Stat Soft, Inc. (2001). STATISTICA (data analysis software system) Version 6.0. www.statsoft.com.

 
 

Studier JA, Keppler KL (1988). A note on the neighbor-joining algorithm of Saitou and Nei. Mol. Biol. Evol. 5:729-731.

 
 

Tsehay S (2012). Genetic diversity and relationships among cultivated and wild Eleusine species collected from Ethiopia as revealed by ISSR Marker. MSc thesis, Addis Ababa University, Ethiopia.

 
 

Wo¨hrmann T, Guicking D, Khoshbakht K, Weising K (2011). Genetic variability in wild populations of Prunus divaricata Ledeb. in northern Iran evaluated by EST-SSR and genomic SSR marker analysis. Genet. Resour. Crop Evol. 58:1157-1167.
Crossref

 
 

Yeh F, Yang R, Boyle T (1999). Population genetic analysis of co-dominant markers and qualitative traits. Belg. J. Bot. 129:157.

 
 

Zietkiewicz E, Rafalski A, Labuda D (1994). Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20:176-183.
Crossref