African Journal of
Biotechnology

  • Abbreviation: Afr. J. Biotechnol.
  • Language: English
  • ISSN: 1684-5315
  • DOI: 10.5897/AJB
  • Start Year: 2002
  • Published Articles: 12496

Full Length Research Paper

Characterization of actinobacteria from the semiarid region, and their antagonistic effect on strains of rhizobia

Jose Vinicius Leite Lima*
  • Jose Vinicius Leite Lima*
  • Laboratório de Microbiologia Ambiental, Universidade Federal do Ceará, Fortaleza, Ceará 60455-760, Brazil.
  • Google Scholar
Suzana Claudia Silveira Martins
  • Suzana Claudia Silveira Martins
  • Laboratório de Microbiologia Ambiental, Universidade Federal do Ceará, Fortaleza, Ceará 60455-760, Brazil.
  • Google Scholar
Katia Aparecida de Siqueira
  • Katia Aparecida de Siqueira
  • Laboratório de Biotecnologia e Ecologia Microbiana, Universidade Federal de Mato Grosso, Cuiabá, Mato Grosso 78060-900, Brazil.
  • Google Scholar
Marcos Antonio Soares
  • Marcos Antonio Soares
  • Laboratório de Biotecnologia e Ecologia Microbiana, Universidade Federal de Mato Grosso, Cuiabá, Mato Grosso 78060-900, Brazil.
  • Google Scholar
Claudia Miranda Martins
  • Claudia Miranda Martins
  • Laboratório de Microbiologia Ambiental, Universidade Federal do Ceará, Fortaleza, Ceará 60455-760, Brazil.
  • Google Scholar


  •  Received: 11 October 2016
  •  Accepted: 23 February 2017
  •  Published: 15 March 2017

References

Ahmed ES, Keyba, HM, Moussa, LA (2014). Gamma ray induced effects on new species of Streptomyces (AEFO2) (HM775973.1GI:302495616) isolated from Egyptian soil. Int. J. Bioassays. 3: 3586-3593.

 

Amal AM, Abeer KA, Samia HM, Nadia AEH, Ahmed KA, El-Hennawi HM (2011). Selection of pigment (melanin) production in Streptomyces and their application in printing and dyeing of wool fabrics. Res. J. Chem. Sci. 1(5): 22-28.

 

Amsaveni R, Sureshkumar M, Vivekanandhan G, Bhuvaneshwari V, Kalaiselvi M, Padmalochana K, Preethikaharshini J (2015). Screening and isolation of pigment producing Actinomycetes from soil samples. J. Biosci. Nanosci. 2(2):24-28.

 

Anandan R, Dharumadurai D, Manogaran GP (2016). An Introduction to Actinobacteria. In: Dhanasekaran D, Jiang Y (eds) Actinobacteria: Basics and Biotechnological Applications. Intech, Rijeka. Pp. 3-37.

 

Arifuzzaman M, Khatun MR, Rahman H (2010). Isolation and screening of actinomycetes from Sundarbans soil for antibacterial activity. Afr. J. Biotechnol. 9(29): 4615-4619.

 

Augustine D, Jacob J C, Ramya KD, Philip R (2013). Actinobacteria from sediment samples of Arabian Sea and Bay of Bengal: Biochemical and physiological characterization. Inte. J. Re. Mar. Sci. 2(2): 53-63.

 

Brito FAE, Ramos KA, Silva RM, Martins CM, Martins SCS (2015). Actinobacteria from rizospheric soil in the caatinga biome. Encicl. Biosf. 11:1992-2004.

 

Clark FE (1965). Actinomyces. In: Black CA (ed) Methods of soil analysis. American Society of Agronomy, Madison. pp. 1498-501.

 

Das P, Solanki R, Khanna M (2014). Isolation and screening of cellulolytic actinomycetes from diverse habitats. Int. J. Adv. Biotec. Res. 5(3):438-451.

 

Dastager SG, Li WJ, Dayanand A, Tang SK, Tian XP, Zhi XY, Xu LH, Jiang CL (2006). Seperation, identification and analysis of pigment (melanin) production in Streptomyces. Afr. J. Biotechnol. 5(8): 1131-1134.

 

Donagema GK, Campos DVB, Calderano SB, Teixeira WG, Viana JHM (2011). Manual de métodos de análise de solos. Embrapa Solos. Rio de Janeiro. 212p.

 

Duraipandiyan V, Sasi AH, Islam VIH, Valanarasu M, Ignacimuthu S (2010). Antimicrobial properties of actinomycetes from the soil of Himalaya. J. Mycol. Med. 20:15-20.
Crossref

 

El-Tarabily KA, Sivasithamparam K (2006). Non-streptomycete actinomycetes as biocontrol agents of soil-borne fungal plant pathogens and as plant growth promoters. Soil. Biol. Biochem. 34: 1-16.
Crossref

 

Flärdh K, Buttner MJ (2009). Streptomyce morphogenetics: Dissecting differentiation in a filamentous bacterium. Nat. Rev. Microbiol. 7:36-49.
Crossref

 

Goodfellow M, Kämpfer P, Busse H, Trujillo ME, Suzuki K, Ludwig W, Whitman WB (2012). Bergey's Manual of Systematic Bacteriology, Volume 5: The Actinobacteria. Springer. Heidelberg. 2083p.

 

Gregor AK, Klubek B, Varsa EC (2003). Identification and use of actinomycetes for enhanced nodulation of soybean co-inoculated with Bradyrhizobium japonicum. Can. J. Microbiol. 49(8): 483-491.
Crossref

 

Janaki T, Nayak BK, Ganesan T (2014). Different pre-treatment methods in selective isolation of Actinomycetes from mangrove sediments of Ariyankuppam back water estuary, Puducherry. Int. J. Adv. Res. Biol. Sci. 1(6):154-163.

 

Jaralla EM, Al-Dabbagh NN, Hameed N, Abdul-Hussain N (2014). Screening for Enzymatic Production Ability and Antimicrobial Activity of Actinomycetes Isolated from Soil in Hillah/Iraq. Int. J. Pharm. Biol. Sci. 9:42-47.

 

Jayasinghe BATD, Parkinson D (2008). Actinomycetes as antagonists of litter decomposer fungi. Appl. Soil. Ecol. 38:109-118.
Crossref

 

Karlovsky P (2008). Secondary Metabolites in Soil Ecology. In: Karlovsky P (ed) Secondary Metabolites in Soil Ecology. Springer. Heidelberg. pp. 1-19.
Crossref

 

Kern ME, Blevins KS (2003). Micologia médica – Texto e Atlas. Editoral Premier. São Paulo. 256p.

 

Kishore P (2012). Isolation, characterization and identification of Actinobacteria of Mangrove ecosystem, Bhitarkanika, Odisha. Dissertation, National Institute of Technology Rourkela.

 

Kumar N, Singh RK, Mishra SK, Singh AK, Pachouri UC (2010). Isolation and screening of soil Actinomycetes as source of antibiotics active against bacteria. Int. J. Microbiol. Res. 2(2):12-16.
Crossref

 

Kumar PS, Raj JPP, Duraipandiyan V, Ignacimuthu S (2012). Antibacterial activity of some actinomycetes from Tamil Nadu, India. Asian. Pac. J. Trop. Biomed. 2(12):936-943.
Crossref

 

Landerkin GB, Lochhead AG (1948). A comparative study of the activity of fifty antibiotic actinomycetes against a variety of soil bacteria. Can. J. Microbiol. 26: 501-506.
Crossref

 

Lauber CL, Hamady M, Knight R, Fierer N (2009). Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Appl. Environ. Microbiol. 75(15):5111-5120.
Crossref

 

Lima JVL, Pinheiro MS, Fiúza LMCG, Martins SCS, Martins CM (2014). Microbial populations cultivable litter soil and of a storage unit in brazilian semi-arid. Encicl. Biosf. 10(18):2300-2316.

 

Mabrouk MI, Salen NM (2014). Molecular identification and characterization of antimicrobial active actinomycetes strains from some Egyptian soils. Am. Eurasian. J. Agric. Environ. Sci. 14:954-963.

 

Manivasagan P, Venkatesan J, Sivakumar K, Kim SK (2013). Marine actinobacterial metabolites: current status and future perspectives. Microbiol. Res. 168(6): 311-332.
Crossref

 

Martinez-Romero A, Segovia L, Mercante FM, Franco AA, Graham P, Pardo MA (1991). Rhizobium tropici, a novel species nodulating Phaseolus vulgaris L. Beans and Leucaena sp. trees. Int. J. Syst. Bacteriol. 41: 417-426.
Crossref

 

Meena B, Rajan LA, Vinithkumar NV, Kirubagaran R (2013). Novel marine actinobacteria from emerald Andaman & Nicobar Islands: a prospective source for industrial and pharmaceutical by products. BMC Mol. Biol. 13(1):1-17.
Crossref

 

Mingma R, Pathom AW, Trakulnaleamsai S, Thamchaipenet A, Duangmal K (2014). Isolation of rhizospheric and roots endophytic actinomycetes from Leguminosae plant and their activities to inhibit soybean pathogen, Xanthomonas campestris pv. Glycine. World. J. Biol. Psychiatr. 30(1):271-280.
Crossref

 

Miyadoh S (1997). Atlas of Actinomycetes. Asakura Publishing. Tóquio. 223p.

 

Monciardini P, Sosio M, Cavaletti L, Chiocchini C, Donadio S (2002). New PCR primers for the selective amplification of 16S rDNA from different groups of actinomycetes. FEMS Microbiol. Ecol. 42:419-429.
Crossref

 

Morris SJ, Blackwood CB (2007). The ecology of soil organisms. In: Paul EA (ed) Soil Microbiology, Ecology, and Biochemistry. Elsevier. Oxford. Pp. 195-229.
Crossref

 

Okoro CK, Brown R, Jones AL, Andrews BA, Asenjo JA, Goodfellow M, Bull AT (2009). Diversity of culturable actinomycetes in hyper-arid soils of the Atacama Desert, Chile. A. Van. Leeuw. 95(2):121-133.
Crossref

 

Parmar N, Dufresne J (2011). Beneficial Interactions of Plant Growth Promoting Rhizosphere Microorganisms. In: Singh A, Parmar N, Kuhad RC (eds) Bioaugmentation, Biostimulation and Biocontrol. Springer. Heidelberg. Pp. 27-42.
Crossref

 

Pereira JC, Neves MCP, Drozdowicz A (1999). Influence of antibiosis produced by actinomycetes on strains of Bradyrhizobium spp. on soybean nodulation. Pesq. Agropec. Bras. 34(1):99-108.

 

Pinheiro MS, Sousa JB, Bertini CHCM, Martins SCS, Martins CM (2014). Isolation and screening of rhizobial strains native from semi-arid tolerant to environmental stress. Encicl. Biosf. 10:2071-2082.

 

Pontes MMCM, Pontes Neto TP, Chaves LFC, Albuquerque SF, Oliveira JP, Figueiredo MVB (2012). Dual inoculation of β-Rhizobium and mycorrhiza at sabiazeiro seedlings for rehabilitation of degraded areas. Pesq. Agropec. Bras. 17:37-45.

 

Ramesh S, Mathivanan N (2009). Screening of marine actinomycetes isolated from the Bay of Bengal, India for antimicrobial activity and industrial enzymes. World. J. Microbiol. Biotechnol. 25(12):2103-2111.
Crossref

 

Ramos KA, Brito FAE, Nunes KJF, Martins CM, Martins SCS (2015). Characterization and crhomogenic diversity of actinobacteria from undisturbed microbial niche in the caatinga biome. Encicl. Biosf. 11:2115-2125.

 

Rao KR, Kiran CR, Rao DB, Madhavi Y, Rao PK, Rao TR (2012). Antagonistic activities of actinobacteria from mangrove sediment. Int. J. Pharm. Pharm. Sci. 4:364-367.

 

Rintala H, Nevalainen A, Rönkä E, Suutari M (2001). PCR primers targeting the 16S rRNA gene for the specific detection of streptomycetes. Mol. Cell. Probes. 15(6):337-347.
Crossref

 

Rousk J, Bååth E, Brookes PC, Lauber CL, Lozupone C, Caporaso JG, Knight R, Fierer N (2010). Soil bacterial and fungal communities across a pH gradient in an arable soil. ISME. J. 4(10):1340-1351.
Crossref

 

Shinobu R (1958). Physiological and cultural study for the identification of soil Actinomycetes species. Mem. Osaka. Univ. B. Nat. Sci. 7:1-76.

 

Shirling EB, Gottlieb D (1966). Methods for characterization of Streptomyces species. Int. J. Syst. Bacteriol. 16:313-340.
Crossref

 

Shivlata L, Satyanarayana T (2015). Thermophilic and alkaliphilic Actinobacteria: biology and potential applications. Front. Microbiol. 6:1-29.
Crossref

 

Silva M S, Sales AN, Magalhães-Guedes KT, Dias DR, Schwan RFS (2013). Brazilian Cerrado Soil Actinobacteria Ecology. Biomed. Res. Int. 2013:1-10.
Crossref

 

Silva VMA, Lima JVL, Gondim PM, Martins CM, Martins SCS (2015). Effect of irrigation and type of cultivation on richness and diversity of chromogenic actinobacteria of soil from ceará semiarid region. Encicl. Biosf. 11:2965-2979.

 

Suneetha V, Zaved AK (2011). Actinomycetes: Sources for Soil Enzymes. In: Shukla G, Varma A (eds) Soil Enzymology. Springer. Heidelberg. Pp. 259-269.

 

Tarkka M, Hampp R (2008). Secondary Metabolites of Soil Streptomycetes in Biotic Interactions. In: Karlovsky P (ed) Secondary Metabolites in Soil Ecology. Springer. Heidelberg. Pp. 107-126.
Crossref

 

Tian-Xing L, Chao L, MingFu G (2011). Genetic diversity of antagonistic endophytic bacteria isolated from Sophora alopecuroide. J. Plant. Dis. Prot. 2:6-8.

 

Van Schreven DA (1964). The effect of some actomycetes on rhizobia and Agrobacterium radiobacter. Plant. Soil. 21:283-302.
Crossref

 

Vincent JM (1970). Manual for the practical study of root nodule bacteria. Blackwell Scientific Publications. Oxford. 176p.

 

Weisburg WG, Barns SM, Pelletier DA, Lane DJ (1991). 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol. 173:697-703
Crossref

 

Wink JM (2012). Compendium of actinobacteria. Braunschweig University of Technology. Braunschweig. Pp. 1-37.

 

Yao ZY, Kan FL, Wang ET, Wei GH, Chen WX (2002). Characterization of rhizobia that nodulate legume species of the genus Lespedeza and description of Bradyrhizobium yuanmingense sp. nov. Int. J. Syst. Evol. Microbiol. 52(6):2219-2230.
Crossref

 

Yu J, Zhang L, Liu Q, Qi X, Ji Y, Kim BS (2015). Isolation and characterization of actinobacteria from Yalujiang coastal wetland, North China. Asian. Pac. J. Trop. Biomed. 5(7):555-560.
Crossref

 

Zhu HH, Guo J, Yao Q, Yang SZ, Deng MR, Hanh VT, Ryan MJ (2007). Streptomyces vietnamensis sp. nov., a streptomycete with violet–blue diffusible pigment isolated from soil in Vietnam. Int. J. Syst. Evol. Microbiol. 57(8):1770-1774.
Crossref

 

Zilli JE, Campo RJ, Hungria M (2010). Effectiveness of Bradyrhizobium inoculation at pre-sowing of soybean. Pesq. Agropec. Bras. 45:335-338.