African Journal of
Microbiology Research

  • Abbreviation: Afr. J. Microbiol. Res.
  • Language: English
  • ISSN: 1996-0808
  • DOI: 10.5897/AJMR
  • Start Year: 2007
  • Published Articles: 5233

Full Length Research Paper

Molecular identification of different actinomycetes isolated from East Black Sea region plateau soil by 16S rDNA gene sequencing

Kamil Isik
  • Kamil Isik
  • Department of Biology, Faculty of Science and Arts, Ondokuz Mayıs University, Samsun -TURKEY
  • Google Scholar
Talha Gencbay
  • Talha Gencbay
  • Department of Biology, Faculty of Science and Arts, Ondokuz Mayıs University, Samsun -TURKEY
  • Google Scholar
Fadime Özdemir- Kocak
  • Fadime Özdemir- Kocak
  • Department of Nursing, School of Health, Bilecik Åžeyh Edebali University, Bilecik -TURKEY
  • Google Scholar
Elif Cil
  • Elif Cil
  • Primary School Education, Faculty of Education, Ordu University, Ordu -TURKEY
  • Google Scholar


  •  Received: 12 July 2013
  •  Accepted: 30 January 2014
  •  Published: 26 February 2014

Abstract

In order to obtain different actinomycetes isolates from the East Black Sea Region plateau soil, an isolation study was carried out by using sucrose gradient method and different growth media. A molecular taxonomic method, 16S rDNA gene sequencing, was applied to obtain different actinomycetes isolates from East Black Sea region plateau soil. Phylogenetic dendrograms based on 16S rDNA nucleotide sequences were constructed by using neighbour-joining algorithm. In the light of phylogenetic analyses, it was determined that out of 15 organisms, two belong to Actinomadura, three Kribbella, three Nocardia, six Micromonospora and an organism of Microbacterium. Soil isolates obtained from this study contribute to taxonomy of actinomycetes and also many species will emerge.

 

Key words: Actinomadura, Kribbella, Microbacterium, Micromonospora, Nocardia, 16S rDNA gene sequencing.