African Journal of
Microbiology Research

  • Abbreviation: Afr. J. Microbiol. Res.
  • Language: English
  • ISSN: 1996-0808
  • DOI: 10.5897/AJMR
  • Start Year: 2007
  • Published Articles: 5233

Full Length Research Paper

Bacterial community in two subtropical fishponds in São Paulo, Brazil

Aylan Kener Meneghine
  • Aylan Kener Meneghine
  • Faculdade de Ciencias Agrarias e Veterinarias. UNESP ? Univ Estadual Paulista, Campus de Jaboticabal, Departamento de Tecnologia. Programa de Pos-graduacao em Microbiologia Agropecuaria, Via de Acesso Prof. Paulo Donato Castellane s/n, 14884-900, Brazil
  • Google Scholar
Daniele Belarmino da Silva
  • Daniele Belarmino da Silva
  • Faculdade de Ciencias Agrarias e Veterinarias. UNESP ? Univ Estadual Paulista, Campus de Jaboticabal, Departamento de Tecnologia. Programa de Pos-graduacao em Microbiologia Agropecuaria, Via de Acesso Prof. Paulo Donato Castellane s/n, 14884-900, Brazil
  • Google Scholar
Rodrigo Ney Millan
  • Rodrigo Ney Millan
  • Universidade do Estado de Minas Gerais. Av. Prof. Mario Palmerio, 1001, Centro, 38200000 - Frutal, MG ? Brazil
  • Google Scholar
Lucia Helena Sipauba-Tavares
  • Lucia Helena Sipauba-Tavares
  • Faculdade de Ciencias Agrarias e Veterinarias, UNESP ? Univ Estadual Paulista. Campus de Jaboticabal, Aquaculture Center. Via de Acesso Prof. Paulo Donato Castellane, s/n, 14884-900, Brazil
  • Google Scholar
Eliana Gertrudes de Macedo Lemos
  • Eliana Gertrudes de Macedo Lemos
  • Faculdade de Ciencias Agrarias e Veterinarias. UNESP ? Univ Estadual Paulista, Campus de Jaboticabal, Departamento de Tecnologia. Programa de Pos-graduacao em Microbiologia Agropecuaria, Via de Acesso Prof. Paulo Donato Castellane s/n, 14884-900, Brazil
  • Google Scholar
Lucia Maria Carareto Alves*
  • Lucia Maria Carareto Alves*
  • Faculdade de Ciencias Agrarias e Veterinarias. UNESP ? Univ Estadual Paulista, Campus de Jaboticabal, Departamento de Tecnologia. Programa de Pos-graduacao em Microbiologia Agropecuaria, Via de Acesso Prof. Paulo Donato Castellane s/n, 14884-900, Brazil
  • Google Scholar


  •  Received: 04 November 2014
  •  Accepted: 02 February 2015
  •  Published: 18 February 2015

References

Azam F, Fenchel T, Field JG, Gray JS, Meyer-Reil LA, Thingstad F (1983). The Ecological role of water-column microbes in the sea. Mar Ecol, Prog Ser. 10: 257-263.
Crossref

 

Bollmann A, Palumbo AV, Lewis K, Epstein SS (2010). Isolation and physiology of bacteria from contaminated subsurface sediments. Appl. Environ. Microbiol. 76(22):7413-7419.
Crossref

 
 

Calijuri MC, Cunha DGF, Queiroz LA, Miwa ACP (2008). Nutrients and chlorophyll-a concentrations in tropical rivers of Ribeira de Iguape Basin, SP, Brazil. Acta Limnol Bras. 20(2):131-138.

 
 

Cao L, Wang W, Yang Y, Yang C, Yuan Z, Xiong S, Diana J (2007). Environmental impact of aquaculture and countermeasures to aquaculture pollution in China. Environ. Sci. Pollut. Res. 14(7):452-462.
Crossref

 
 

Chislock MF, Doster E, Zitomer RA, Wilson AE (2013) Eutrophication: causes, consequences, and controls in aquatic ecosystems. Nature Education Knowledge 4(4):10.

 
 

Cole JR, Wang Q, Caardenas E, Fish J, Chai B, Farris RJ, Kulam-Syed-Mohideen, AS, Mcgarrell DM, Marsh T, Garrity GM, Tiedje JM (2009). The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res. 37:141-145.
Crossref

 
 

Conley DJ, Paerl HW, Howarth RW, Boesch DF, Seitzinger SP, Havens KE, Lancelot C, Likens FE (2009). Controlling eutrophication: nitrogen and phosphorus. Science 323:1014-1015.
Crossref

 
 

Dias SG, Sipaúba-Tavares LH (2012). Physical, chemical and microbiological aspects during the dry and rainy seasons in a pond covered by macrophyte used in aquaculture water supply. Acta Limnol. Bras. 24(3):276-284.
Crossref

 
 

Dunfield PF, Tamas I, Lee KC, Morgan XC, Mcdonald IR, Stott MB (2012) Electing a candidate: a speculative history of the bacterial phylum OP10. Environ Microbiol. 14(12):3069-3080.
Crossref

 
 

Eiler A, Bersilsson S (2004). Composition of freshwater bacterial communities associated with cyanobacterial blooms in four Swedish lakes. Environ Microbiol 5(12):1228-1243.
Crossref

 
 

Ewing B, Green P (1998). Base-calling of automated sequencer traces using phred. II. Error probabilities. Gen Res 8:186-194.

 
 

Ewing B, Hillier L, Wendl MC, Green P (1998). Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Gen Res. 8:175-185.
Crossref

 
 

FAO (2012). The state of world fisheries and aquaculture. www.fao.org/icatalog/inter-e.htm (accessed 27 Feb 2013).

 
 

Fenchel T (2008). The microbial loop – 25 years later. J. Exp. Mar. Biol. Ecol. 366:99-103.
Crossref

 
 

Forster S, Lappin-Scott HM, Snape JR, Porter J (2003). Rains, drains and active strains: towards online assessment of wastewater bacterial communities. J. Microbiol. Meth. 55:859-864.
Crossref

 
 

Glöckner FO, Zaichikov E, Belkova N, Denissova L, Pernthaler J, Pernthaler A, Armann R (2000). Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of Actinobacteria. Appl. Environ. Microbiol. 66(11):5053-5065.
Crossref

 
 

Golterman HL, Clymo RS, Ohnstad MAM (1978). Methods for physical and chemical analysis of fresh water. 2ed. Oxford: Blackwell Scientific Publication.

 
 

Hahn MW, Kasalický V, Jezbera J, Brandt B, Simek K (2010b). Limnohabitans australis sp. nov., isolated from a freshwater pond, and emended description of the genus Limnohabitans. Int. J. Syst. Evol. Microbiol. 60:2946-2950.
Crossref

 
 

Hahn MW, Lang E, Brandt U, Lünsdorf H, Wu QL, Stackebrandt E (2010a). Polynucleobacter cosmopolitanus sp. nov., free-living planktonic bacteria inhabiting freshwater lakes and rivers. Int. J. Syst. Evol. Micr. 60:166-173.
Crossref

 
 

Huson DH, Auch AF, Qi J, Schuster SC (2007). MEGAN analysis of metagenomic data. Genome Res. 17:377-386.
Crossref

 
 

Kasalický V, Jezbera J, Simek K, Hahn MW (2010). Limnohabitas planktonicus sp. nov. and Limnohabitans parvus sp. nov., planktonic betaproteobacteria isolted from a freshwater reservoir, and emended description of the genus Limnohabitans. Int. J. Syst. Evol. Microbiol. 60:2710-2714.
Crossref

 
 

Kemp PF, Aller JY (2004). Bacterial diversity in aquatic and other environments: what 16S rDNA libraries can tell us. FEMS Microbiol Ecol. 47:161-177.
Crossref

 
 

Koroleff F (1976). Determination of nutrients. In: Grashof E, Kremling E (Eds.) Methods of seawater analysis. German: Verlag Chemie Wenhein.

 
 

Leff LG (2009). Freshwater habitats. In: Encyclopedia of Microbiology 190-204.

 
 

Legendre P, Legendre L (1998). Numerical Ecology. Amsterdam: Elsevier Science B.V.

 
 

Macedo CF, Sipaúba-Tavares LH (2010). Eutrofização e qualidade da água na piscicultura: consequências e recomendações. Bol. Inst. Pesca, São Paulo 36(2):149-163.

 
 

Newton RJ, Jones SE, Eiler A, Mcmahon KD, Bertilsson S (2011). A guide to the natural history of freshwater lake bacteria. Microbiol. Mol. Biol. Rev. 75(1):14-49.
Crossref

 
 

Noar J D, Buckley D H (2009). Ideonella azotifigens sp. nov., an aerobic diazotroph of the Betaproteobacteria isolated from grass rhizosphere soil, and emended description of the genus Ideonella. Int. J. Syst.Evol. Micr. 59:1941-1946.
Crossref

 
 

Nishimura Y, Nagata T (2007). Alphaproteobacterial dominance in a large mesotrophic lake (Lake Biwa, Japan). Aquat. Microb Ecol. 48:231-240.
Crossref

 
 

Pedrinho EAN, Moreira WMQ, Carareto Alves LM, Val Moraes SP, Lemos EGM (2012). Comparison of microbial diversity in soils cultivated with sugar cane and native forest in the state of Sao Paulo – Brazil. Curr. Pharm. Biotech. (Print)13:134.

 
 

Peel MC, Finlayson BL, Mcmahon TA (2007). Updated world map of the Köpen-Geiger climate classification. Hydrol. Earth Sys. Sci. 11:1633-1644.
Crossref

 
 

Pereira RHG, Espíndola, ELG, Eller, MN (2004). Limnological variables and their correlation with water flow in fishponds. Acta Limnol. Bras. 16(3):263-271.

 
 

Petrosino JF, Highlander S, Luna RA, Gibbs RA, Versalovic J (2009). Metagenomic Pyrosequencing and Microbial Identification. Clin. Chem. 55:856-866.
Crossref

 
 

Sipaúba-Tavares LH (1995). Limnologia aplicada à aquicultura. Jaboticabal: FUNEP.

 
 

Sipaúba-Tavares LH, Guariglia CST, Braga FMS (2007). Effects of rainfall on water quality in six sequentially disposed fishponds with continuous water flow. Braz. J. Biol. 67(4):643-649.
Crossref

 
 

Sipaúba-Tavares LH, Lourenço EM, Braga FMS (2010). Water quality in six sequentially disposed fishponds with continuous water flow. Acta Sci. Biol. Sci. 32(1):9-15.
Crossref

 
 

Sokal RR, Rohlf FJ (1981). Biometry: The principles and practice of statistics in biological research. W.H. Freeman and Company, San Francisco.

 
 

Souza JAM, Tieppo E, Magnani GS, Alves LMC, Cardoso RL, Cruz LM, Oliveira LF, Raittz RT, Souza EM, Pedrosa FO, Lemos EGM (2012). Draft genome sequence of the nitrogen-fixing symbiotic bacterium Bradyrhizobium elkanii 587. J. bacteriol. 194(13):3547-3548.
Crossref

 
 

Statsoft, Inc. STATISTICA (2007). (data analysis software system), version 8. Available from: www.statsoft.com [accessed 30 Nov 2012].

 
 

Taipale S, Jones RI, Tiirola M (2009). Vertical diversity of bacteria in an oxygen- stratified humic lake, evaluated using DNA and phospholipid analyses. Aquat. Microb. Ecol. 55:1–16.
Crossref

 
 

Wang QGM, Garrity J, Tiedje M, Cole JR (2007). Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy. Appl. Environ. Microbiol. 73(16):5261-5267.
Crossref

 
 

Young JPW, Downer HL, Eardly BD (1991). Phylogeny of the phototrophic Rhizobium strain BTAi by polymerase chain reaction-based sequencing of a 16S rRNA gene segment. J. Bacteriol. 173:2271-2277.
Pubmed

 
 

Yuan L, Zhu W, Xiao L, Yang L (2009). Phosphorus cycling between the colonial cyanobacterium Microcystis aeruginosa and attached bacteria, Pseudomonas. Aquat. Ecol. 43:859-866.
Crossref

 
 

Zwart G, Crump BC, Agterveld MPK, Hagen F, Han SK (2002). Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers. Aquat. Microb. Ecol. 28:141-155.
Crossref