African Journal of
Bacteriology Research

  • Abbreviation: J. Bacteriol. Res.
  • Language: English
  • ISSN: 2006-9871
  • DOI: 10.5897/JBR
  • Start Year: 2009
  • Published Articles: 108

Full Length Research Paper

Antibiotic resistance genes in diarrheagenic Escherichia coli (DEC) isolated from livestock organic wastes in Ouagadougou, Burkina Faso

Evariste BAKO
  • Evariste BAKO
  • Laboratoire de Biologie Moléculaire d’Epidémiologie et de Surveillance des Bactéries et Virus Transmis par les Aliments (LaBESTA), Centre de Recherche en Sciences Biologiques, Alimentaires et Nutritionnelles (CRSBAN), Université Ouaga I Prof Joseph KI-ZERBO, 03 BP 7021 Ouagadougou 03, Burkina Faso.
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Asseta KAGAMBEGA
  • Asseta KAGAMBEGA
  • Laboratoire de Biologie Moléculaire d’Epidémiologie et de Surveillance des Bactéries et Virus Transmis par les Aliments (LaBESTA), Centre de Recherche en Sciences Biologiques, Alimentaires et Nutritionnelles (CRSBAN), Université Ouaga I Prof Joseph KI-ZERBO, 03 BP 7021 Ouagadougou 03, Burkina Faso.
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Germaine MINOUNGOU
  • Germaine MINOUNGOU
  • Laboratoire National d'Élevage (LNE), Ministère de la Santé animale; 03 BP 7026 Ouagadougou 03 Burkina Faso.
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Noah Obeng NKRUMAH
  • Noah Obeng NKRUMAH
  • Department of Medical Laboratory Sciences, School of Biomedical and Allied Health Sciences, P.O. Box KB 143, Accra, Ghana.
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Tounwendsida Serge BAGRE
  • Tounwendsida Serge BAGRE
  • Laboratoire de Biologie Moléculaire d’Epidémiologie et de Surveillance des Bactéries et Virus Transmis par les Aliments (LaBESTA), Centre de Recherche en Sciences Biologiques, Alimentaires et Nutritionnelles (CRSBAN), Université Ouaga I Prof Joseph KI-ZERBO, 03 BP 7021 Ouagadougou 03, Burkina Faso.
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Cheikna ZONGO
  • Cheikna ZONGO
  • Laboratoire de Biochimie et d’Immunologie Appliquée (LABIA), Centre de Recherche en Sciences Biologiques Alimentaires et Nutritionnelles (CRSBAN), Université Ouaga I Professeur Joseph KI-ZERBO, 03 BP 7131 Ouagadougou 03, Burkina Faso.
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Oumar TRAORÉ
  • Oumar TRAORÉ
  • Laboratoire de Biologie Moléculaire d’Epidémiologie et de Surveillance des Bactéries et Virus Transmis par les Aliments (LaBESTA), Centre de Recherche en Sciences Biologiques, Alimentaires et Nutritionnelles (CRSBAN), Université Ouaga I Prof Joseph KI-ZERBO, 03 BP 7021 Ouagadougou 03, Burkina Faso.
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Réné DEMBÉLÉ
  • Réné DEMBÉLÉ
  • Laboratoire de Biologie Moléculaire d’Epidémiologie et de Surveillance des Bactéries et Virus Transmis par les Aliments (LaBESTA), Centre de Recherche en Sciences Biologiques, Alimentaires et Nutritionnelles (CRSBAN), Université Ouaga I Prof Joseph KI-ZERBO, 03 BP 7021 Ouagadougou 03, Burkina Faso.
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Sidi MOCTAR
  • Sidi MOCTAR
  • Laboratoire National d'Élevage (LNE), Ministère de la Santé animale; 03 BP 7026 Ouagadougou 03 Burkina Faso.
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Anne OUEDRAOGO
  • Anne OUEDRAOGO
  • Laboratoire National d'Élevage (LNE), Ministère de la Santé animale; 03 BP 7026 Ouagadougou 03 Burkina Faso.
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Nicolas BARRO
  • Nicolas BARRO
  • Laboratoire de Biologie Moléculaire d’Epidémiologie et de Surveillance des Bactéries et Virus Transmis par les Aliments (LaBESTA), Centre de Recherche en Sciences Biologiques, Alimentaires et Nutritionnelles (CRSBAN), Université Ouaga I Prof Joseph KI-ZERBO, 03 BP 7021 Ouagadougou 03, Burkina Faso.
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  •  Received: 26 May 2018
  •  Accepted: 15 August 2018
  •  Published: 30 September 2018

References

Afset JE, Anderssen E, Bruant G, Harel J, Wieler L, Bergh K (2008). Phylogenetic backgrounds and virulence profiles of atypical enteropathogenic Escherichia coli strains from a case-control study using multilocus sequence typing and DNA microarray analysis. Journal of Clinical Microbiology 46:2280-2290.
Crossref

 

Ajayi AO, Oluyege AO, Olowe OA, Famurewa O (2011). Antibiotic resistance among commensal Escherichia coli isolated from feces of cattle in Ado-Ekiti, Nigeria. Journal of Animal and Veterinary Advances 10(2):174-179.
Crossref

 
 

Antikainen J, Tarkka E, Haukka K, Siitonen A, Vaara M, Kirveskari J (2009). New 16-plex PCR method for rapid detection of diarrheagenic Escherichia coli directly from stool samples. European Journal of Clinical Microbiology & Infectious Diseases 28(8):899-908.
Crossref

 
 

Bako E, Kagambèga A, Traore KA, Bagre TS, Ibrahim HB, Bouda SC, Bonkoungou, IJO, Kaboré S, Zongo C, Traore AS, Barro N (2017). Characterization of diarrheagenic Escherichia coli isolated in organic waste products (cattle fecal matter, manure and, slurry) from cattle's markets in Ouagadougou, Burkina Faso. International Journal of Environmental Research and Public Health 14:1100.
Crossref

 
 

Bauer AW, Kirby WMM, Sherries JC, Turck M (1966). Antibiotic susceptibility testing. The American Journal of Pathology 45:493-496.

 
 

Bonkoungou IJO, Lienemann T, Martikainen O, Dembelé R, Sanou I, Traoré AS, Siitonen A, Barro N, Haukka K (2012). Diarrhoeagenic Escherichia coli detected by 16-plex PCR in children with and without diarrhea in Burkina Faso. Clinical Microbiology and Infection 18(9):901-906.
Crossref

 
 

Boyd DA, Tyler S, Christianson S, McGeer A, Muller MP, Willey BM, Bryce E, Gardam M, Nordmann P, Mulvey MR (2004). Complete nucleotide sequence of a 92-kilobase plasmid harboring the CTX-M-15 extended-spectrum beta-lactamase involved in an outbreak in long-term-care facilities in Toronto, Canada. Antimicrobial Agents and Chemotherapy 48(10):3758-3764.
Crossref

 
 

Cattoir V, Poirel L, Rotimi V, Soussy CJ, Nordmann P (2007). Multiplex PCR for detection of plasmid-mediated quinolone resistance qnr genes in ESBL-producing enterobacterial isolates. Journal of Antimicrobial Chemotherapy 60(2):394-397.
Crossref

 
 

Chen B, Zheng W, Yu Y, Huang W, Zheng S, Zhang Y, Guan X, Zhuang Y, Chen N, Topp E (2011). Class 1 integrons, selected virulence genes, and antibiotic resistance in Escherichia coli isolates from the Minjiang River, Fujian Province, China. Applied and Environmental Microbiology 77(1):148-155.
Crossref

 
 

Dembélé R, Bonkoungou IJO, Konaté A, Bsadjo Tchamba G, Bawa HI, Bako E, Bagre TS, Kagambèga A, Zongo C, Traore AS, Barro N (2015). Serotyping and antimicrobial resistance of enteropathogenic Escherichia coli and enterohemorrhagic E. coli O157 isolated from children under five years of age with diarrhea in rural Burkina Faso. African Journal of Microbiology Research 9(14):1053-1059.
Crossref

 
 

Dong HJ, Lee S, Kim W, An JU, Kim J, Kim D, Cho S (2017). Prevalence, virulence potential, and pulsed-field gel electrophoresis profiling of Shiga toxin-producing Escherichia coli strains from cattle. Gut Pathogens 9(1):22.
Crossref

 
 

Hale TL (1991). Genetic basis of virulence in Shigella species. Microbiology Reviews 55:206-224.

 
 

Harrington SM, Dudley EG, Nataro JP (2006). Pathogenesis of enteroaggregative Escherichia coli infection. FEMS Microbiology Letters 254:12-18.
Crossref

 
 

Henderson IR, Czeczulin J, Eslava C, Noriega F, Nataro JP (1999). Characterization of pic, a secreted protease of Shigella flexneri and enteroaggregative Escherichia coli. Infection and Immunity 67:5587-5596.

 
 

Hopkins KL, Davies RH, Threlfall EJ (2005). Mechanisms of quinolone resistance in Escherichia coli and Salmonella: recent developments. International Journal of Antimicrobial Agents 25(5):358-373.
Crossref

 
 

Hoseini SS, Dastmalchi Saei H, Ownagh A (2014). Molecular detection of extended spectrum β-lactamase (ESBL) genes blaCTX-M, blaTEM and blaSHV in Escherichia coli isolated from water buffalo (Bubalus bubalis) feces in West Azerbaijan province. Iranian Journal of Veterinary Research 69(3):203-212.

 
 

Iweriebor BC, Iwu CJ, Obi LC, Nwodo UU, Okoh AI (2015). Multiple antibiotic resistances among Shiga toxin producing Escherichia coli O157 in feces of dairy cattle farms in Eastern Cape of South Africa. BMC Microbiology 15(1):213.
Crossref

 
 

Kagambèga A, Martikainen O, Siitonen A, Traoré AS, Barro N, Haukka K (2012). Prevalence of diarrheagenic Escherichia coli virulence genes in the feces of slaughtered cattle, chickens, and pigs in Burkina Faso. Microbiologyopen 1(3):276-284.
Crossref

 
 

Kamga HG, Nzengang R, Toukam M, Sando Z, Shiro SK (2014). Phénotypes de résistance des souches de Escherichia coli responsables des infections urinaires communautaires dans la ville de Yaoundé (Cameroun). African Journal of Cellular Pathology 3:1-4.
Crossref

 
 

Kaper JB, Nataro JP, Mobley HL (2004). Pathogenic Escherichia coli. Nature Reviews Microbiology 2(2):123-140.
Crossref

 
 

Koczura R, Mokracka J, Jablonska L, Gozdecka E, Kubek M, Kaznowski A (2012). Antimicrobial resistance of integron-harboring Escherichia coli isolates from clinical samples, wastewater treatment plant and river water. Science of the Total Environment 414:680-685.
Crossref

 
 

Konaté A, Dembélé R, Zongo C, Kaboré WAD, Bonkoungou IJO, Traoré AS, Barro N (2017). Occurrence of Multiple Antibiotic Resistances of Escherichia coli Isolated from Diarrheal Children Less Than Five Years in Burkina. European Journal of Pharmaceutical and Medical Research 4(1):165-171.

 
 

Lanz R, Kuhnert P, Boerlin P (2003). Antimicrobial resistance and resistance gene determinants in clinical Escherichia coli from different animal species in Switzerland. Veterinary Microbiology 91(1):73-84.
Crossref

 
 

Manyi-Loh CE, Mamphweli SN, Meyer EL, Makaka G, Simon M, Okoh AI (2016). An Overview of the Control of Bacterial Pathogens in Cattle Manure. International Journal of Environmental Research and Public Health 13(9):843.
Crossref

 
 

Møller TSB, Overgaard M, Nielsen SS, Bortolaia V, Sommer MOA, Guardabassi L, Olsen JE (2016). Relation between tetR and tetA expression in tetracycline resistant Escherichia coli. BMC Microbiology 16(1):39.
Crossref

 
 

Müller D, Greune L, Heusipp G, Karch H, Fruth A, Tschäpe H, Schmidt MA (2007). Identification of unconventional intestinal pathogenic Escherichia coli isolates expressing intermediate virulence factor profiles by using a novel single-step multiplex PCR. Applied and Environmental Microbiology 73(10):3380-3390.
Crossref

 
 

Nataro JP, Kaper JB (1998). Diarrheagenic Escherichia coli. Clinical Microbiology Reviews 11:142-201.

 
 

Nordmann P, Poirel L (2005). Emergence of plasmid-mediated resistance to quinolones in Enterobacteriaceae. Journal of Antimicrobial Chemotherapy 56(3):463-469.
Crossref

 
 

Okeke IN (2009). Diarrheagenic Escherichia coli in sub-Saharan Africa: Status, uncertainties and necessities. Journal of Infection in Developing Countries 3(11):817-842.

 
 

World Health Organization (WHO) (2014). Antimicrobial resistance: global report on surveillance. Who. https://doi.org/1.4.2014

 
 

Pakzad I, Ghafourian S, Taherikalani M, Abtahi H, Rahbar M, Jamshidi N (2011). qnr Prevalence in Extended Spectrum Beta-lactamases (ESBLs) and None-ESBLs Producing Escherichia coli Isolated from Urinary Tract Infections in Central of Iran ESBL screening methods. Iran. Iranian Journal of Basic Medical Sciences14(5):458-464.

 
 

Paton JC, Paton AW (1998). Pathogenesis and diagnosis of Shiga toxin-producing Escherichia coli infections. Clinical Microbiology Reviews 11(3):450-479.

 
 

Rodríguez-Martínez JM, Cano ME, Velasco C, Martínez-Martínez L, Pascual Á (2011). Plasmid-mediated quinolone resistance: An update. Journal of Infection and Chemotherapy 17(2):149-182.
Crossref

 
 

Samandoulougou S, Ilboudo AJ, Ouedraogo GS, Bagre T S, Tapsoba FW, Compaore H, Dao A, Zoungrana A, Savadogo A (2016). Physico-chemical and nutritional quality of eggs from local chicken and of improved race consumed in Ouagadougou, Burkina Faso. International Journal of Biological and Chemical Sciences 10:737–748.
Crossref

 
 

Sidhu JPS, Ahmed W, Hodgers L, Toze S (2013). Occurrence of virulence genes associated with diarrheagenic pathotypes in Escherichia coli isolates from surface water. Applied and Environmental Microbiology 79(1):328-335.
Crossref

 
 

Singer AC, Shaw H, Rhodes V, Hart A (2016) Review of Antimicrobial Resistance in the Environment and Its Relevance to Environmental Regulators. Frontiers in Microbiology 7:1728.
Crossref

 
 

Stavropoulos TA, Strathdee CA (2000). Expression of the tetA(C) tetracycline efflux pump in Escherichia coli confers osmotic sensitivity. FEMS Microbiology Letter 90(1):147-150.
Crossref

 
 

Strau LM, Dahms C, Becker K, Kramer A, Kaase M, Mellmann A (2015). Development and evaluation of a novel universal β-lactamase gene subtyping assay for blaSHV, blaTEM and blaCTX-M using clinical and livestock-associated Escherichia coli. Journal of Antimicrobial Chemotherapy 70(3):710-715.
Crossref

 
 

The European Committee on Antimicrobial Susceptibility Testing (EUCAST) (2015). European Committee on Antimicrobial Susceptibility Testing Breakpoint tables for interpretation of MICs and zone diameters European Committee on Antimicrobial Susceptibility Testing Breakpoint tables for interpretation of MICs and zone diameters. 

View.

 
 

The European Committee on Antimicrobial Susceptibility Testing (EUCAST) (2017). Breakpoint tables for interpretation of MICs and zone diameters, version 7.0, 2017. 0–77. 

View

 
 

Um MM, Barraud O, Kérourédan M, Gaschet M, Stalder T, Oswald E, Dagot C, Ploy MC, Brugère H, Bibbal D (2016). Comparison of the incidence of pathogenic and antibiotic-resistant Escherichia coli strains in adult cattle and veal calf slaughterhouse effluents highlighted different risks for public health. Water Research 88:30-38.
Crossref

 
 

Woodford N, Carattoli AKE (2009). Complete nucleotide sequences of plasmids pEK204, pEK499 and pEK516, encoding CTX-M enzymes in three major Escherichia coli lineages from United Kingdom, all belonging to international 025:H4-ST131 clone. Antimicrobial Agents and Chemotherapy 53:4472-4482.
Crossref

 
 

Yue L, Jiang, HX, Liao XP, Liu JH, Li SJ, Chen XY, Chen CX, Lü DH, Liu YH, Liu, YH (2008). Prevalence of plasmid-mediated quinolone resistance qnr genes in poultry and swine clinical isolates of Escherichia coli. Veterinary Microbiology 132(3-4):414-420.
Crossref