African Journal of
Microbiology Research

  • Abbreviation: Afr. J. Microbiol. Res.
  • Language: English
  • ISSN: 1996-0808
  • DOI: 10.5897/AJMR
  • Start Year: 2007
  • Published Articles: 5233

Full Length Research Paper

Molecular identification and codon optimization analysis of major virulence encoding genes of Aeromonas hydrophila

Vijai Singh1,2*, Dharmendra Kumar Chaudhary1, Indra Mani1,3, Pallavi Somvanshi4, Gaurav Rathore1 and Neeraj Sood1
  1National Bureau of Fish Genetic Resources, Canal Ring Road, P.O. Dilkusha, Lucknow-226002, India. 2Epigenomics Project, Universite d’Evry Val d’Essonne Genopole CNRS 5, rue Henri Desbruères, 91030 Evry, France. 3Department of Biochemistry, Banaras Hindu University, Varanasi -221005, India. 4Bioinformatics Centre, Biotech Park, Sector-G, Jankipuram, Lucknow-226021, India.
Email: [email protected]

  •  Accepted: 04 March 2010
  •  Published: 18 May 2010

Abstract

 

Aeromonas hydrophila is an opportunistic pathogen of aquatic and terrestrial animals and human beings. The aim of this study is to investigate 25 isolates of A. hydrophilafrom 40 fish muscles and 12 water samples. All isolates are screened for the presence of virulence factors such as aerolysin, hemolysin and lipase both phenotypically as well as genotypically. All the isolates produced lipase, whereas only 60% of isolates produced b-hemolysis with RBCs. The presence of 3 virulence genes aerolysin, hemolysin and lipase were confirmed by PCR assay, which gave positive PCR amplification for conserved fragment. These were also codon optimized for over expression in Escherichia coli and obtained the high codon adaptation index in comparison to wild type of DNA sequences. These finding may help to better expression of gene for scale up production of vaccine candidates.

 

Keywords: Aeromonas hydrophila, virulence factor, PCR, codon optimization, vaccine.