African Journal of
Microbiology Research

  • Abbreviation: Afr. J. Microbiol. Res.
  • Language: English
  • ISSN: 1996-0808
  • DOI: 10.5897/AJMR
  • Start Year: 2007
  • Published Articles: 5233

Full Length Research Paper

Genetic characterization of H5N1 avian influenza viruses isolated from pet bird and chickens from live bird market in Bali and Bekasi (Indonesia), 2011

Ni Luh Putu Indi Dharmayanti*
  • Ni Luh Putu Indi Dharmayanti*
  • Indonesian Research Center for Veterinary Science, JL RE Martadinata 30, Bogor 16114, West Java, Indonesia.
  • Google Scholar
Atik Ratnawati
  • Atik Ratnawati
  • Indonesian Research Center for Veterinary Science, JL RE Martadinata 30, Bogor 16114, West Java, Indonesia.
  • Google Scholar
Dyah Ayu Hewajuli
  • Dyah Ayu Hewajuli
  • Indonesian Research Center for Veterinary Science, JL RE Martadinata 30, Bogor 16114, West Java, Indonesia.
  • Google Scholar
Risa Indriani
  • Risa Indriani
  • Indonesian Research Center for Veterinary Science, JL RE Martadinata 30, Bogor 16114, West Java, Indonesia.
  • Google Scholar


  •  Accepted: 16 September 2013
  •  Published: 15 January 2014

References

 
Aditama TY, Samaan G, Kusriastuti R, Sampurno OD, Purba W, Misriyah, Santoso H, Bratasena A, Maruf A, Sariwati E, Setiawaty V, Glass K, Lokuge K, Kelly PM, Kandun IN (2012). Avian Influenza H5N1 Transmission in Households, Indonesia. PLoS ONE : 7.1:e29971.
Croosref
 
Dharmayanti NLP I, Samaan G, Ibrahim F, Indriani R, Darminto, Soebandrio A (2011b). The genetic drift of Indonesian avian influenza viruses A H5N1 viruses during 2003-2008. Microbiol Indones. 5. 2:68-80.
 
Dharmayanti NLPI (2009). Perubahan Genoma Virus Avian Influenza subtipe H5N1 pada unggas di Indonesia. [Disertasi]. Jakarta : Universitas Indonesia. p. 278
 
Dharmayanti NLPI, Damayanti R, Wiyono A, Indriani R, Darminto (2004). Identifikasi virus avian influenza virus isolat Indonesia dengan metode reverse transcripatese polymerase chain reaction RT-PCR. J. Ilmu Ternak dan Vet. 9(2):136-143
 
Dharmayanti NLPI, Ibrahim F, Darminto, Soebandrio A (2011a). Influenza H5N1 virus of birds surrounding H5N1 human cases have specific characteristic on matrix protein. Hayati J Biosci. 18(2):82-90
Croosref
 
Gao Y, Zhang Y, Shinya K, Deng G, Jiang Y, Li Z, Guan Y, Tian G, Li Y, Shi J, Liu L, Zeng X, Bu Z, Xia X, Kawaoka Y, Chen H (2009). Identification of Amino Acids in HA and PB2 Critical for the Transmission of H5N1 Avian Influenza Viruses in a Mammalian Host. Plos Pathogens. 5. 12. e1000709.
Croosref
 
Herfst S, Schrauwen EJA, Linster M, Chutinimitkul S, de Wit E, Munster VJ, Sorrell EM, Bestebroer TM, Burke DF, Smith DJ, Rimmelzwaan GF, Osterhaus ADME, Fouchier RAM (2012). Airborne Transmission of Influenza A/H5N1 Virus Between Ferrets Science. 336:1534-1541
 
Hoffman E, Stech J, Guan Y, Webster RG, Perez DR (2001). Universal primer set for the full-length amplification of all influenza A viruses. Arch. Virol. 146:2275-2289.
Croosref
 
Lee MS, Chan PC, Shien JH, Cheng MC, Shieh HP (2001). Identification and subtyping of avian influenza viruses by reverse transcription-PCR. J.Virol. Methods 97:13-22.
Croosref
 
Long JX, Peng DC, Liu Y, YWu YT, Liu XF (2008). Virulence of H5N1 avian influenza virus enhanced by a 15-nucleotide deletion in the viral nonstructural gene. Virus Genes. 36:471-478.
Croosref
 
Obenauer JC, Denson J, Mehta PK, Su X, Mukatira S, Finkelstein DB, Xu X, Wang J, Ma J, Fan Y, Rakestraw KM, Webster RG, Hoffmann E, Krauss S, Zheng J, Zhang Z, Naeve, CW (2006). Large-scale sequence analysis of avian influenza isolates. Science 311:1576-1580.
Croosref
 
Senne DA, Panigrahy B, Kawaoka Y, Pearson JE, Suss J, Lipkind M., Kida H, Webster RG (1996). Survey of the hemagglutinin (HA) cleavage site sequence of H5 and H7 avian influenza viruses: amino acid sequence at the HA cleavage site as a marker of pathogenicity potential. Avian Dis. 40:425-437
Croosref
 
Yamada S, Suzuki Y, Suzuki T, Le MQ, Nidom CA, Sakai-Tagawa Y, Muramoto Y, Ito M, Kiso M, Horimoto T, Shinya K, Sawada T, Kiso M, Usui T, Murata T, Lin Y, Hay A, Haire LF, Stevens DJ, Russell RJ, Gamblin SJ, Skehel JJ, Kawaoka Y (2006). Haemagglutinin mutations responsible for the binding of H5N1 influenza A viruses to human-type receptors. Nature. 444:378-382.
Croosref
 
Stevens A, Blixt O, Tumpey TM, Taubenberger JK, Paulson JC, Wilson IA (2006). Structure and receptor specificity of the hemagglutinin from an H5N1 influenza virus. Science. 312:404-410.
Croosref
 
Subbarao EK, London W, Murphy BR (1993). A Single Amino Acid in the PB2 Gene of Influenza A Virus Is a Determinant of Host Range. J. Virol. 77. 4 : 1761-1764
 
Wiyono A, Indriani R, Dharmayanti NLPI, Damayanti R, Darminto (2004). Isolasi dan Karakterisasi Virus Highly Pathogenic Avian Influenza subtipe H5 dari ayam asal Wabah di Indonesia. JITV. 991:61-71.
 
WHO (World Health Organization, 2012). Avian influenza-Situation in Indonesia-Up date. View