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References
|
Agata K, Alassad S, Almeida-Val VMF, Álvarez-Dios JA, Barbisan F, Beadell JS, Beltrán JF, Benítez M, Bino G, Bleay C, Bloor P, Bohlmann J, Booth W, Boscari E, Caccone A, Campos T, Carvalho BM, Clímaco GT, Clobert J, Congiu L, Cowger C, Dias G, Doadrio I, Farias IP, Ferrand N, Freitas FD, Fusco G, Galetti PM, Gallardo-Escárate C, Gaunt MW, Ocampo ZG, Gonçalves H, Gonzales EG, Haye P, Honnay O, Hyseni C, Jacquemyn H, Jowers MJ, Kakezawa A, Kawagushi E, Keeling C, Kwan Y-S, la Spina M, Lee W-O, Lesniewska M, Li Y, Liu H, Liu X, Lopes S, Martínez P, Meeus S, Murray BW, Nunes AG, Okedi LM, Ouma JO, Pardo BG, Parks R, Paula-Silva MN, Pedraza-Lara C, Perera OP, Pino-Querido A, Richard M, Rossini BC, Samarasekera NG, A Sánchez, Sanchez JA, Santos CHA, Shinohara W, Soriguer RC, Sousa ACB, Sousa CFS, Steves VM, Tejedo M, Valenzuela-Bustamante M, van de Vliet MS, Vandepitte K, Vera M, Wandeler P, Wang W, Won Y-J, Yamashiro A, Yamashiro T, Zhu C. Molecular Ecology Resources Primer Development Consortium (2011). Permanent genetic resources added to molecular ecology resources database 1 December 2010 – 31 January 2011. Mol. Ecol. Resour. 11:586-589. Crossref |
||||
|
Amos W, Balmford A (2001). When does conservation genetics matter? Heredity 87:257-265. Crossref |
||||
|
Antao T, Lopes A, Lopes RJ, Beja-Pereira A, G Luikart (2008). LOSITAN: a workbench to detect molecular adaptation based on a FST-outlier method. BMC Bioinformatics 9:323. Crossref |
||||
| Arantes CC, Castello L, Garcez DS (2007). Variações entre contagem de Arapaima gigas (Schinz) (Osteoglossomorpha, Osteoglossidae) feitas por pescadores individualmente em Mamirauá, Brasil. Pan-Am. J. Aquat. Sci. 2(3):263-269. | ||||
|
Araripe J, Rêgo PS, Queiroz H, Sampaio I, Schneider H (2013). Dispersal capacity and genetic structure of Arapaima gigas on different geographic scales using microsatellite markers. Plos One 8(1):e54470. Crossref |
||||
|
Barroso RM, Hilsdorf AWS, Moreira HLM, Cabello PH, Traub-Cseko YM (2005). Genetic diversity of wild and cultured populations of Brycon opalinus (Cuvier, 1819) (Characiforme, Characidae, Bryconiae) using microsatellites. Aquaculture 247:51-65. Crossref |
||||
|
Beaumont MA, Nichols RA (1996). Evaluating loci for use in the genetic analysis of population structure. Proc. R. Soc. B 363:1619-1626. Crossref |
||||
| Belkhir K, Borsa P, Chikhi L, Raufaste N, Bonhomme F (2004). GENETIX 4.05, logiciel sous Windows TM pour la génétique des populations. Montpellier, France: Laboratoire Génome, Populations, Interactions, CNRS UMR 5171, Université de Montpellier II. | ||||
| Benzecri JP (1973). L'Analyse des donnees. Vol 2: L'Analyse des Correspondances. Paris: Dunod. | ||||
|
Boettcher PJ, Tixier-Boichard M, Toro MA, Simianer H, Eding H, Gandini G, Joost S, Garcia D, Coli L, Ajmone-Marsan P, GLOBALDIV Consortium (2010). Objectives, criteria and methods for using molecular genetic data in priority setting for conservation of animal genetic resources. Anim. Genet. 41:64-77. Crossref |
||||
|
Broquet T, Angelone S, Jaquiery J, Joly P, Lena JP, Lengagne T, Plenet S, Luquet E, Perrin N (2010). Genetic bottlenecks driven by population disconnection. Conserv. Biol. 24(6):1596-1605. Crossref |
||||
|
Castello L (2008). Lateral migration of Arapaima gigas in floodplains of the Amazon. Ecol. Freshw. Fish 17:38-46. Crossref |
||||
|
Castello L (2004). A method to count pirarucu: fishers, assessment and management. N. Am. J. Fish Manage 24:379-389. Crossref |
||||
|
Cavalli-Sforza LL, Edwards AWF (1967). Phylogenetic analysis: models and estimation procedures. Am. J. Hum. Genet. 19:233-257. PMid:6026583 PMCid:PMC1706274 |
||||
| Cornuet JM, Luikart G (1996). Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144:2001-2014. | ||||
|
Crawford NG (2010). SMOGD: software for the measurement of genetic diversity. Mol. Ecol. Res. 10:556-557. Crossref |
||||
|
di Rienzo A, Peterson AC, Garza JC, Valdes AM, Slatkin M, Freimer NB (1994). Mutational processes of simple sequence repeat loci in human populations. Proc. Natl. Acad. Sci. USA 91:3166-3170. Crossref |
||||
|
Earl DA, von Holdt BM (2012). Structure Harvester: a website and program for visualizing structure output and implementing the Evanno method. Conserv. Gen. Res. 4(2):359-361. Crossref |
||||
|
Einum S, Fleming IA (1997). Genetic divergence and interactions in the wild among native, farmed and hybrid Atlantic salmon. J. Fish Biol. 50:634-651. Crossref |
||||
|
Ellegren H, Sheldon BC (2008). Genetic basic of fitness differences in natural populations. Nature 452:169-175. Crossref |
||||
|
Evanno G, Regnaut S, Goudet J (2005). Detecting the number of clusters of individuals using the software structure: a simulation study. Mol. Ecol. 14(8):2611-2620. Crossref |
||||
|
Excoffier L, Lischer HEL (2010). Arlequin suite ver 3.5: a new series of programs to performance populations genetics analyses under Linux and Windows. Mol. Ecol. Res. 10:564-567. Crossref |
||||
| Excoffier L, Slatkin M (1995). Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Mol. Biol. Evol. 12:921-927. | ||||
| Falush D, Stephens M, Pritchard JK (2003). Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164:1567-1587. | ||||
|
Farias IP, Hrbek T, Brinkmann H, Sampaio I, Meyer A (2003). Characterization and isolation of DNA microsatellite primers for Arapaima gigas, an economically important but severely over-exploited fish species of the Amazon basin. Mol. Ecol. Notes 3:128-130. Crossref |
||||
| Goudet J (2001). FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3.2). Updated from Goudet J (1995) FSTAT version 1.2: a computer program to calculate F-statistics. J. Hered. 86:485-486. | ||||
| Goulding M (1980). The fishes and the forest. Los Angeles, CA, USA: University of California Press. P. 200. | ||||
|
Glover KA, Skaala Ø, Søvik AGE, TA Helle (2011). Genetic differentiation among Atlantic salmon reared in sea-cages reveals a non-random distribution of genetic material from a breeding programme to commercial production. Aquac. Res. 42:1323-1331. Crossref |
||||
| Hartl DL, Clark AG (2010). Princípios de genética de populações, 4th Edition. Porto Alegre: Artmed. P. 660. | ||||
|
He L, Xie Y-N, Lu W, Wang Y, Chen L-L, Mather PB, Zhao Y-L, Wang Y-P, Wang Q (2012). Genetic diversity in three redclaw crayfish (Cherax quadricarinatus, von Martens) lines developed in culture in China. Aquac. Res. 43:75-83. Crossref |
||||
|
Hedrick PW (2005). A standardized genetic differentiation measure. Evolution 59:1633-1638. Crossref |
||||
|
Hedrick PW (2001). Conservation genetics: where are we now? Trends Ecol. Evol. 16(11):629-636. Crossref |
||||
|
Hedrick PW (1999). Perspective: highly variable loci and their interpretation in evolution and conservation. Evolution 53:313-318. Crossref |
||||
|
Hrbek T, Farias IP, Crossa M, Sampaio I, Porto JIR, Meyer A (2005). Population genetic analysis of Arapaima gigas, one of the largest freshwater fishes of the Amazon basic: implications for its conservation. Anim. Conserv. 8:297-308. Crossref |
||||
|
Jost L (2008). GST and its relatives do not measure differentiation. Mol. Ecol. 17(18):4015-4026. Crossref |
||||
|
Kalinowski ST, Taper ML, Marshall TC (2007). Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Mol. Ecol. 16:1099-1106. Crossref |
||||
| Kimura M, Crow J (1964). The number of alleles that can be maintained in a finite population. Genetics 49:725-738. | ||||
|
Kimura M, Otha T (1978). Stepwise mutation model and distribution of allelic frequencies in a finite population. Proc. Natl. Acad. Sci. USA 75:2868-2872. Crossref |
||||
|
Laikre L, Nilsson T, Primmer CR, Ryman N, Allendorf FW (2009). Importance of genetics in the interpretation of favourable conservation status. Conserv. Biol. 23(6):1378-1381. Crossref |
||||
| Lewis PO, Zaykin D (2000). Genetic Data Analysis: computer program for the analysis of allelic Data, Version 1.0. (d15). Storrs, CT: University of Connecticut. | ||||
|
Luikart G, Cornut JM (1998). Empirical evaluation of a test for identifying recently bottlenecked populations from allele frequency data. Conserv. Biol. 12:228-237. Crossref |
||||
| Nei M (1978). Estimation of average heterozigosity and genetic distance from a small number of individuals. Genetics 89: 583-590. | ||||
|
Nei M, Chesser RK (1983). Estimation of fixation indices and gene diversities. Ann. Hum. Genet. 47(3):253-259. Crossref |
||||
|
Nunes VL, Beaumont MA, Butlin RK, Paulo OS (2011). Multiple approaches to detect outlier in a genome scan for selection in ocellated lizards (Lacerta lepida) along an environmental gradient. Mol. Ecol. 20:193-205. Crossref |
||||
|
Oliveira V, Poleto SL, Venere PC (2005). Feeding of juvenile pirarucu (Arapaima gigas, Arapaimidae) in their natural environment, lago Quarto Bocas, Araguaiana – MT, Brazil. Neotrop Ichthyol 3(2):312-314. Crossref |
||||
|
Orr HA (1998). The population genetics of adaptation: the distribuition of factors fixed during adaptive evolution. Evolution 52:935-949. Crossref |
||||
| Ortiz WS, Salcedo RDL, Ruíz LC, Macías JNL (2007). Potencial acuícola de pirarucu (Arapaima gigas) em la cueca Amazónica. Rev. Elect. Ing. Prod. Acuíc. 2:75-83. | ||||
|
Pérez-Ruzafa A, González-Wangüemert M, Lenfant P, Marcos C, García-Charton JA (2006). Effects of fishing protection on the genetic structure of fish populations. Biol. Conserv. 129:244-255. Crossref |
||||
|
Piry S, Luikart G, Cornuet JM (1999). Bottleneck: a computer program for detecting recent reductions in the effective population size using allele frequency data. J. Hered. 90:502-503. Crossref |
||||
| Pritchard JK, Stephens M, Donnelly P (2000). Inference of population structure using multilocus genotype data. Genetics 155:945-959. | ||||
| Pullin RSV (2007). Genetic resources for aquaculture: status and trends. In: Bartley DM, Harvey BJ, Pullin RSV (editors). Workshop on status and trends in aquatic genetic resources: A basic for international policy: 8-10 May 2006, Victoria, British Columbia, Canada. Rome: Food & Agriculture Org. | ||||
|
Rice WR (1989). Analyzing tables of statistical tests. Evolution 43:223-225. Crossref |
||||
| Sambrook J, Fritsch EF, Maniatis T (1989). Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory. | ||||
|
Santos CHA, Leitão MAB, Sousa CFS, Santana GX, Paula-Silva MN, Almeida-Val VMF (2012). Genetic variability of wild and captivity populations of Colossoma macropomum (Cuvier, 1818). Acta Sci. Biol. Sci. 34(2):191-197. Crossref |
||||
| Silva JAG (2008). Genética de populações de pirarucus (Arapaima gigas) da Reserva de Mamirauá e considerações sobre a estrutura genética para a espécie. Tese (Doutorado em Zoologia) 101. Belém, Brasil: Museu Paraense Emilio Goeldi, Universidade Federal do Pará. | ||||
| Slatkin MA (1995). A measure of population subdivision based on microsatellite allele frequencies. Genetics 130:457-462. | ||||
|
Sønstebø JH, Borgstrøm R, Heun M (2007). Genetic structure of brwn trout (Salmo trutta L.) from the Hardangervidda mountain plateau (Norway) analyzed by microsatellite DNA: a basic for conservation guidelines. Conserv. Gen. 8:33-44. Crossref |
||||
|
Stewart DJ (2013a). A new species of Arapaima (Osteoglossomorpha: Osteoglossidae) from the Solimões river, Amazonas State, Brazil. Copeia 3:470-476. Crossref |
||||
|
Stewart DJ (2013b). Re-escription of Arapaima agassizzi (Valenciennes), a rare fish from Brazil (Osteoglossomorpha: Osteoglossidae). Copeia 1:38-51. Crossref |
||||
|
Teixeira AS (2008). The monotony of transferrin and esterase electrophoretic patterns in pirarucu, Arapaima gigas (Schinz, 1822) from Santa Cruz lake, Tefé River, Amazonas, Brazil. Genet. Mol. Res. 7(2):407-416. Crossref |
||||
|
Utter F (2004). Population genetics, conservation and evolution in salmonids and other widely cultured fish; some perspectives over six decades. Rev. Fish. Biol. Fisheries 14:125-144. Crossref |
||||
|
van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004). Micro-Checker: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4:535-538. Crossref |
||||
|
Vasemägi A, Cross R, Paaver T, Koljonen ML, Nilsson J (2005). Extensive immigration from compensatory hatchery releases into wild Atlantic salmon population in the Baltic sea: spatio-temporal analysis over 18 year. Heredity 95:76-83. Crossref |
||||
| Venturiere R, Bernardino G (1999). Pirarucu, espécie ameaçada pode ser salva através do cultivo. Rev. Panor. Aquic. 9:13-21. | ||||
| Viana JP, Castello L, Damasceno JMB, Amaral ESR, Estupi-án GMB, Arantes C, Batista GS, Garces DS, Barbosa S (2007). Manejo comunitário do pirarucu Arapaima gigas na Reserva de Desenvolvimento Sustentável de Mamirauá, Amazonas, Brasil. In: Áreas protegidas como instrumento de gestão pesqueira. Brasília MMA. pp. 239-261. | ||||
|
Vitalis R, Dawson K, Boursot P, Belkhir K (2003). DetSel 1.0: a computer program to detect markers responding to selection. J. Hered. 94(5):429-431. Crossref |
||||
| Vitalis R, Dawson K, Boursot P (2001). Interpretation the heterogeneity of F values: a suggestion and a correction. Genetics 84:399-401. | ||||
|
Wasko AP, Martins C, Oliveira C, Senhorini JA, Foresti F (2004). Genetic monitoring of the Amazonian fish matrinchã (Brycon cephalus) using RAPD markers: insights into supporting and conservation programmes. J. Appl. Ichthyol. 20:48-52. Crossref |
||||
|
Weir BS, Cockerham CC (1984). Estimating F statistics for the analysis of population structure. Evolution 38:1358-1370. Crossref |
||||
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