International Journal of
Fisheries and Aquaculture

  • Abbreviation: Int. J. Fish. Aquac.
  • Language: English
  • ISSN: 2006-9839
  • DOI: 10.5897/IJFA
  • Start Year: 2010
  • Published Articles: 234

Full Length Research Paper

Genetic relationships between captive and wild subpopulations of Arapaima gigas (Schinz, in Cuvier, 1822)

Carlos Henrique dos Anjos dos Santos
  • Carlos Henrique dos Anjos dos Santos
  • Universidade Nilton Lins (UNINILTONLINS), Laboratório de Genética Aplicada à Aquicultura and Biologia Molecular, Avenida Professor Nilton Lins, Flores, 69058-030, Manaus, Amazonas, Brasil.
  • Google Scholar
Carolina Sousa de Sá Leitão
  • Carolina Sousa de Sá Leitão
  • Instituto Nacional de Pesquisas da Amazônia (INPA), Laboratório de Ecofisiologia e Evolução Molecular (LEEM), Avenida André Araújo, 2936, Aleixo, 69060-001, Manaus, Amazonas, Brasil
  • Google Scholar
Maria de Nazaré Paula e Silva
  • Maria de Nazaré Paula e Silva
  • Instituto Nacional de Pesquisas da Amazônia (INPA), Laboratório de Ecofisiologia e Evolução Molecular (LEEM), Avenida André Araújo, 2936, Aleixo, 69060-001, Manaus, Amazonas, Brasil
  • Google Scholar
Vera Maria Fonseca de Almeida e Val
  • Vera Maria Fonseca de Almeida e Val
  • Instituto Nacional de Pesquisas da Amazônia (INPA), Laboratório de Ecofisiologia e Evolução Molecular (LEEM), Avenida André Araújo, 2936, Aleixo, 69060-001, Manaus, Amazonas, Brasil
  • Google Scholar


  •  Received: 24 February 2014
  •  Accepted: 10 September 2014
  •  Published: 29 October 2014

References

Agata K, Alassad S, Almeida-Val VMF, Álvarez-Dios JA, Barbisan F, Beadell JS, Beltrán JF, Benítez M, Bino G, Bleay C, Bloor P, Bohlmann J, Booth W, Boscari E, Caccone A, Campos T, Carvalho BM, Clímaco GT, Clobert J, Congiu L, Cowger C, Dias G, Doadrio I, Farias IP, Ferrand N, Freitas FD, Fusco G, Galetti PM, Gallardo-Escárate C, Gaunt MW, Ocampo ZG, Gonçalves H, Gonzales EG, Haye P, Honnay O, Hyseni C, Jacquemyn H, Jowers MJ, Kakezawa A, Kawagushi E, Keeling C, Kwan Y-S, la Spina M, Lee W-O, Lesniewska M, Li Y, Liu H, Liu X, Lopes S, Martínez P, Meeus S, Murray BW, Nunes AG, Okedi LM, Ouma JO, Pardo BG, Parks R, Paula-Silva MN, Pedraza-Lara C, Perera OP, Pino-Querido A, Richard M, Rossini BC, Samarasekera NG, A Sánchez, Sanchez JA, Santos CHA, Shinohara W, Soriguer RC, Sousa ACB, Sousa CFS, Steves VM, Tejedo M, Valenzuela-Bustamante M, van de Vliet MS, Vandepitte K, Vera M, Wandeler P, Wang W, Won Y-J, Yamashiro A, Yamashiro T, Zhu C. Molecular Ecology Resources Primer Development Consortium (2011). Permanent genetic resources added to molecular ecology resources database 1 December 2010 – 31 January 2011. Mol. Ecol. Resour. 11:586-589.
Crossref
 
Amos W, Balmford A (2001). When does conservation genetics matter? Heredity 87:257-265. 
Crossref
 
Antao T, Lopes A, Lopes RJ, Beja-Pereira A, G Luikart (2008). LOSITAN: a workbench to detect molecular adaptation based on a FST-outlier method. BMC Bioinformatics 9:323.
Crossref
 
Arantes CC, Castello L, Garcez DS (2007). Variações entre contagem de Arapaima gigas (Schinz) (Osteoglossomorpha, Osteoglossidae) feitas por pescadores individualmente em Mamirauá, Brasil. Pan-Am. J. Aquat. Sci. 2(3):263-269.
 
Araripe J, Rêgo PS, Queiroz H, Sampaio I, Schneider H (2013). Dispersal capacity and genetic structure of Arapaima gigas on different geographic scales using microsatellite markers. Plos One 8(1):e54470.
Crossref
 
Barroso RM, Hilsdorf AWS, Moreira HLM, Cabello PH, Traub-Cseko YM (2005). Genetic diversity of wild and cultured populations of Brycon opalinus (Cuvier, 1819) (Characiforme, Characidae, Bryconiae) using microsatellites. Aquaculture 247:51-65.
Crossref
 
Beaumont MA, Nichols RA (1996). Evaluating loci for use in the genetic analysis of population structure. Proc. R. Soc. B 363:1619-1626.
Crossref
 
Belkhir K, Borsa P, Chikhi L, Raufaste N, Bonhomme F (2004). GENETIX 4.05, logiciel sous Windows TM pour la génétique des populations. Montpellier, France: Laboratoire Génome, Populations, Interactions, CNRS UMR 5171, Université de Montpellier II.
 
Benzecri JP (1973). L'Analyse des donnees. Vol 2: L'Analyse des Correspondances. Paris: Dunod.
 
Boettcher PJ, Tixier-Boichard M, Toro MA, Simianer H, Eding H, Gandini G, Joost S, Garcia D, Coli L, Ajmone-Marsan P, GLOBALDIV Consortium (2010). Objectives, criteria and methods for using molecular genetic data in priority setting for conservation of animal genetic resources. Anim. Genet. 41:64-77.
Crossref
 
Broquet T, Angelone S, Jaquiery J, Joly P, Lena JP, Lengagne T, Plenet S, Luquet E, Perrin N (2010). Genetic bottlenecks driven by population disconnection. Conserv. Biol. 24(6):1596-1605.
Crossref
 
Castello L (2008). Lateral migration of Arapaima gigas in floodplains of the Amazon. Ecol. Freshw. Fish 17:38-46.
Crossref
 
Castello L (2004). A method to count pirarucu: fishers, assessment and management. N. Am. J. Fish Manage 24:379-389.
Crossref
 
Cavalli-Sforza LL, Edwards AWF (1967). Phylogenetic analysis: models and estimation procedures. Am. J. Hum. Genet. 19:233-257.
PMid:6026583 PMCid:PMC1706274
 
Cornuet JM, Luikart G (1996). Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144:2001-2014.
 
Crawford NG (2010). SMOGD: software for the measurement of genetic diversity. Mol. Ecol. Res. 10:556-557.
Crossref
 
di Rienzo A, Peterson AC, Garza JC, Valdes AM, Slatkin M, Freimer NB (1994). Mutational processes of simple sequence repeat loci in human populations. Proc. Natl. Acad. Sci. USA 91:3166-3170.
Crossref
 
Earl DA, von Holdt BM (2012). Structure Harvester: a website and program for visualizing structure output and implementing the Evanno method. Conserv. Gen. Res. 4(2):359-361.
Crossref
 
Einum S, Fleming IA (1997). Genetic divergence and interactions in the wild among native, farmed and hybrid Atlantic salmon. J. Fish Biol. 50:634-651.
Crossref
 
Ellegren H, Sheldon BC (2008). Genetic basic of fitness differences in natural populations. Nature 452:169-175.
Crossref
 
Evanno G, Regnaut S, Goudet J (2005). Detecting the number of clusters of individuals using the software structure: a simulation study. Mol. Ecol. 14(8):2611-2620.
Crossref
 
Excoffier L, Lischer HEL (2010). Arlequin suite ver 3.5: a new series of programs to performance populations genetics analyses under Linux and Windows. Mol. Ecol. Res. 10:564-567.
Crossref
 
Excoffier L, Slatkin M (1995). Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Mol. Biol. Evol. 12:921-927.
 
Falush D, Stephens M, Pritchard JK (2003). Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164:1567-1587.
 
Farias IP, Hrbek T, Brinkmann H, Sampaio I, Meyer A (2003). Characterization and isolation of DNA microsatellite primers for Arapaima gigas, an economically important but severely over-exploited fish species of the Amazon basin. Mol. Ecol. Notes 3:128-130.
Crossref
 
 
Goudet J (2001). FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3.2). Updated from Goudet J (1995) FSTAT version 1.2: a computer program to calculate F-statistics. J. Hered. 86:485-486.
 
Goulding M (1980). The fishes and the forest. Los Angeles, CA, USA: University of California Press. P. 200.
 
Glover KA, Skaala Ø, Søvik AGE, TA Helle (2011). Genetic differentiation among Atlantic salmon reared in sea-cages reveals a non-random distribution of genetic material from a breeding programme to commercial production. Aquac. Res. 42:1323-1331.
Crossref
 
Hartl DL, Clark AG (2010). Princípios de genética de populações, 4th Edition. Porto Alegre: Artmed. P. 660.
 
He L, Xie Y-N, Lu W, Wang Y, Chen L-L, Mather PB, Zhao Y-L, Wang Y-P, Wang Q (2012). Genetic diversity in three redclaw crayfish (Cherax quadricarinatus, von Martens) lines developed in culture in China. Aquac. Res. 43:75-83.
Crossref
 
Hedrick PW (2005). A standardized genetic differentiation measure. Evolution 59:1633-1638.
Crossref
 
 
Hedrick PW (2001). Conservation genetics: where are we now? Trends Ecol. Evol. 16(11):629-636.
Crossref
 
Hedrick PW (1999). Perspective: highly variable loci and their interpretation in evolution and conservation. Evolution 53:313-318.
Crossref
 
Hrbek T, Farias IP, Crossa M, Sampaio I, Porto JIR, Meyer A (2005). Population genetic analysis of Arapaima gigas, one of the largest freshwater fishes of the Amazon basic: implications for its conservation. Anim. Conserv. 8:297-308.
Crossref
 
Jost L (2008). GST and its relatives do not measure differentiation. Mol. Ecol. 17(18):4015-4026.
Crossref
 
 
Kalinowski ST, Taper ML, Marshall TC (2007). Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Mol. Ecol. 16:1099-1106.
Crossref
 
Kimura M, Crow J (1964). The number of alleles that can be maintained in a finite population. Genetics 49:725-738.
 
Kimura M, Otha T (1978). Stepwise mutation model and distribution of allelic frequencies in a finite population. Proc. Natl. Acad. Sci. USA 75:2868-2872.
Crossref
 
Laikre L, Nilsson T, Primmer CR, Ryman N, Allendorf FW (2009). Importance of genetics in the interpretation of favourable conservation status. Conserv. Biol. 23(6):1378-1381.
Crossref
 
Lewis PO, Zaykin D (2000). Genetic Data Analysis: computer program for the analysis of allelic Data, Version 1.0. (d15). Storrs, CT: University of Connecticut.
 
Luikart G, Cornut JM (1998). Empirical evaluation of a test for identifying recently bottlenecked populations from allele frequency data. Conserv. Biol. 12:228-237.
Crossref
 
Nei M (1978). Estimation of average heterozigosity and genetic distance from a small number of individuals. Genetics 89: 583-590.
 
Nei M, Chesser RK (1983). Estimation of fixation indices and gene diversities. Ann. Hum. Genet. 47(3):253-259.
Crossref
 
Nunes VL, Beaumont MA, Butlin RK, Paulo OS (2011). Multiple approaches to detect outlier in a genome scan for selection in ocellated lizards (Lacerta lepida) along an environmental gradient. Mol. Ecol. 20:193-205.
Crossref
 
Oliveira V, Poleto SL, Venere PC (2005). Feeding of juvenile pirarucu (Arapaima gigas, Arapaimidae) in their natural environment, lago Quarto Bocas, Araguaiana – MT, Brazil. Neotrop Ichthyol 3(2):312-314.
Crossref
 
Orr HA (1998). The population genetics of adaptation: the distribuition of factors fixed during adaptive evolution. Evolution 52:935-949.
Crossref
 
Ortiz WS, Salcedo RDL, Ruíz LC, Macías JNL (2007). Potencial acuícola de pirarucu (Arapaima gigas) em la cueca Amazónica. Rev. Elect. Ing. Prod. Acuíc. 2:75-83.
 
Pérez-Ruzafa A, González-Wangüemert M, Lenfant P, Marcos C, García-Charton JA (2006). Effects of fishing protection on the genetic structure of fish populations. Biol. Conserv. 129:244-255.
Crossref
 
Piry S, Luikart G, Cornuet JM (1999). Bottleneck: a computer program for detecting recent reductions in the effective population size using allele frequency data. J. Hered. 90:502-503.
Crossref
 
Pritchard JK, Stephens M, Donnelly P (2000). Inference of population structure using multilocus genotype data. Genetics 155:945-959.
 
Pullin RSV (2007). Genetic resources for aquaculture: status and trends. In: Bartley DM, Harvey BJ, Pullin RSV (editors). Workshop on status and trends in aquatic genetic resources: A basic for international policy: 8-10 May 2006, Victoria, British Columbia, Canada. Rome: Food & Agriculture Org.
 
Rice WR (1989). Analyzing tables of statistical tests. Evolution 43:223-225.
Crossref
 
Sambrook J, Fritsch EF, Maniatis T (1989). Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
 
Santos CHA, Leitão MAB, Sousa CFS, Santana GX, Paula-Silva MN, Almeida-Val VMF (2012). Genetic variability of wild and captivity populations of Colossoma macropomum (Cuvier, 1818). Acta Sci. Biol. Sci. 34(2):191-197.
Crossref
 
Silva JAG (2008). Genética de populações de pirarucus (Arapaima gigas) da Reserva de Mamirauá e considerações sobre a estrutura genética para a espécie. Tese (Doutorado em Zoologia) 101. Belém, Brasil: Museu Paraense Emilio Goeldi, Universidade Federal do Pará.
 
Slatkin MA (1995). A measure of population subdivision based on microsatellite allele frequencies. Genetics 130:457-462.
 
Sønstebø JH, Borgstrøm R, Heun M (2007). Genetic structure of brwn trout (Salmo trutta L.) from the Hardangervidda mountain plateau (Norway) analyzed by microsatellite DNA: a basic for conservation guidelines. Conserv. Gen. 8:33-44.
Crossref
 
Stewart DJ (2013a). A new species of Arapaima (Osteoglossomorpha: Osteoglossidae) from the Solimões river, Amazonas State, Brazil. Copeia 3:470-476.
Crossref
 
Stewart DJ (2013b). Re-escription of Arapaima agassizzi (Valenciennes), a rare fish from Brazil (Osteoglossomorpha: Osteoglossidae). Copeia 1:38-51.
Crossref
 
Teixeira AS (2008). The monotony of transferrin and esterase electrophoretic patterns in pirarucu, Arapaima gigas (Schinz, 1822) from Santa Cruz lake, Tefé River, Amazonas, Brazil. Genet. Mol. Res. 7(2):407-416.
Crossref
 
Utter F (2004). Population genetics, conservation and evolution in salmonids and other widely cultured fish; some perspectives over six decades. Rev. Fish. Biol. Fisheries 14:125-144.
Crossref
 
 
van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004). Micro-Checker: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4:535-538.
Crossref
 
 
Vasemägi A, Cross R, Paaver T, Koljonen ML, Nilsson J (2005). Extensive immigration from compensatory hatchery releases into wild Atlantic salmon population in the Baltic sea: spatio-temporal analysis over 18 year. Heredity 95:76-83.
Crossref
 
Venturiere R, Bernardino G (1999). Pirarucu, espécie ameaçada pode ser salva através do cultivo. Rev. Panor. Aquic. 9:13-21.
 
Viana JP, Castello L, Damasceno JMB, Amaral ESR, Estupi-án GMB, Arantes C, Batista GS, Garces DS, Barbosa S (2007). Manejo comunitário do pirarucu Arapaima gigas na Reserva de Desenvolvimento Sustentável de Mamirauá, Amazonas, Brasil. In: Áreas protegidas como instrumento de gestão pesqueira. Brasília MMA. pp. 239-261.
 
Vitalis R, Dawson K, Boursot P, Belkhir K (2003). DetSel 1.0: a computer program to detect markers responding to selection. J. Hered. 94(5):429-431.
Crossref
 
Vitalis R, Dawson K, Boursot P (2001). Interpretation the heterogeneity of F values: a suggestion and a correction. Genetics 84:399-401.
 
Wasko AP, Martins C, Oliveira C, Senhorini JA, Foresti F (2004). Genetic monitoring of the Amazonian fish matrinchã (Brycon cephalus) using RAPD markers: insights into supporting and conservation programmes. J. Appl. Ichthyol. 20:48-52.
Crossref
 
 
Weir BS, Cockerham CC (1984). Estimating F statistics for the analysis of population structure. Evolution 38:1358-1370.
Crossref